PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0974s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 351aa    MW: 40125.8 Da    PI: 4.6188
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0974s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.81.8e-38211201100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          aCaaCk++rrkC+++C+l+pyfp++++++f n+hklFG+sn++k++++l++ ++++am+++++++++ra+dPv G++++i++lq  +e  
  Kalax.0974s0004.1.p  21 ACAACKYQRRKCEPNCILSPYFPHNRQAQFLNAHKLFGVSNITKIIRNLSPADKDQAMKTIIFQSDVRANDPVGGCYRIIRELQFMIEYY 110
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +ael+l+ ++
  Kalax.0974s0004.1.p 111 QAELDLVLHQ 120
                          ****998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.79320121IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3521117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MNPPTTTNTI PRIKNNTTTQ ACAACKYQRR KCEPNCILSP YFPHNRQAQF LNAHKLFGVS  60
NITKIIRNLS PADKDQAMKT IIFQSDVRAN DPVGGCYRII RELQFMIEYY QAELDLVLHQ  120
LSICRAQQAQ AQPQAHNKDN QQEQDDQQQQ QQQYLPFMTS DQAANNNCSD PSSDVINADP  180
LNAYSPSSLQ YSYHHQQQQQ LHLQLGGNNS NRGEEDNFVL VQDNDHRYDN IQANADVWAV  240
QHEEQQEQMV NYCLNNNVEE DQNNSKDSFD QKKDLADNMP CFERSTDKHK FNIEEDHADG  300
ESSHEEAVLN GSKTLCRVEE SDSVQNEGYE DEESADAWFA LTNCKRIKTA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-242211512105LOB family transfactor Ramosa2.1
5ly0_B3e-242211512105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021650016.12e-70LOB domain-containing protein 22-like
TrEMBLA0A2C9UXW97e-69A0A2C9UXW9_MANES; Uncharacterized protein
TrEMBLA0A2C9W2F48e-69A0A2C9W2F4_MANES; Uncharacterized protein
STRINGcassava4.1_022118m1e-69(Manihot esculenta)
STRINGcassava4.1_028597m1e-69(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-52LOB domain-containing protein 22