PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0959s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LSD | ||||||||
Protein Properties | Length: 177aa MW: 18582.5 Da PI: 8.4376 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 36 | 1.2e-11 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++Cr +L YPrGA++V+Ca+C ++ Kalax.0959s0005.1.p 7 CSSCRSILLYPRGATNVCCAICRAI 31 **********************986 PP | |||||||
2 | zf-LSD1 | 48.3 | 1.6e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+s+RC++C+tV Kalax.0959s0005.1.p 46 CGGCRTLLMYTRGATSIRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 49.2 | 8.6e-16 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V Kalax.0959s0005.1.p 84 CGNCRTTLMYPYGAPSVKCAICQYV 108 ***********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.6E-11 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.7E-10 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.9E-17 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.3E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.30.40.10 | 7.3E-4 | 60 | 111 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
TIGRFAMs | TIGR01053 | 1.7E-13 | 81 | 111 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-14 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MQSQLMCSSC RSILLYPRGA TNVCCAICRA ITSVPPPGME MAQLICGGCR TLLMYTRGAT 60 SIRCSCCHTV NLAPTSNQVA HVNCGNCRTT LMYPYGAPSV KCAICQYVTN VGTSDGRVPI 120 PVSRPNEVSA SSSASSTSTA MPHIQNQTVV VENPMSVDES GKLVSNVVVG VTKDKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225697.1 | 1e-102 | PREDICTED: protein LSD1 | ||||
Swissprot | Q6ASS2 | 1e-71 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A2P5CRE2 | 1e-101 | A0A2P5CRE2_PARAD; Multihem cytochrome | ||||
STRING | XP_008225697.1 | 1e-101 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-71 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0959s0005.1.p |
Publications ? help Back to Top | |||
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