PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0956s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 378aa    MW: 41593.2 Da    PI: 7.2448
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0956s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l+d++++ G+g +W + ++++g++R++k+c++rw++yl
  Kalax.0956s0011.1.p 14 KGPWSPEEDSKLKDYIEKNGTGgNWIALPQKVGLRRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding37.55.6e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +++eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Kalax.0956s0011.1.p  69 GDFSEEEDRVICSLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          689******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.717962IPR017930Myb domain
SuperFamilySSF466893.72E-2711109IPR009057Homeodomain-like
SMARTSM007173.0E-121364IPR001005SANT/Myb domain
PfamPF002492.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231569IPR009057Homeodomain-like
CDDcd001672.78E-91662No hitNo description
PROSITE profilePS5129422.33863117IPR017930Myb domain
SMARTSM007171.3E-1167115IPR001005SANT/Myb domain
PfamPF002496.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2370117IPR009057Homeodomain-like
CDDcd001679.95E-871110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKDYIE KNGTGGNWIA LPQKVGLRRC GKSCRLRWLN  60
YLRPNIKHGD FSEEEDRVIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLAF  120
AAAASSSSTT AAFNAAAAAS SAFHHRSSAA NKPLPPSMYS STSSSSHMTS LYNNYNYTPN  180
PNNPKQPLMV DDNHQQQPLL SATATSSCLE TGVSQQQYYQ PLIMFGGTGS DLQQTSCSSN  240
NSENNGGGIS CGNKQADMGI MSYHNFNNNS SIRSNIIPAG FDEINDSNVF LSHQFDDHHS  300
TIINSSTDDD APPAPALMAD FYLDVVKQQQ QQLSMNMNDL SLINIGGGNQ QVINSKITSQ  360
EKDHQRMMMY YFNTDYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012695.14e-83PREDICTED: transcription factor RAX2-like
TrEMBLA0A3Q7HYM45e-81A0A3Q7HYM4_SOLLC; Uncharacterized protein
STRINGXP_006488026.13e-81(Citrus sinensis)
STRINGSolyc09g008250.2.17e-82(Solanum lycopersicum)
STRINGXP_006424474.13e-81(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-79myb domain protein 68