PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0942s0001.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | AP2 | ||||||||
Protein Properties | Length: 261aa MW: 28626.6 Da PI: 9.3049 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 143 | 192 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Kalax.0942s0001.2.p 143 SPYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 192 68*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.49E-16 | 143 | 201 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.714 | 144 | 200 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-32 | 144 | 206 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.67E-12 | 145 | 200 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.2E-17 | 145 | 200 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-9 | 145 | 192 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MFDLNIHYSH HHQSTNPSST DSAATSSSSV IVNSTSAGDE DSASINNHTS APPSTLFFDI 60 LNRDHENPVP VAGAGLVART LFPSAVESSS SPAVVPQWLN LSFADSASSH SELCSLQQPN 120 HHNLQQLKPV GKKSRRGPRS RSSPYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA 180 RAYDRAAIKF RGVDADINFD LKDYDNDMKQ MAELSKEEFV HVLRRQSTGF ARSSSKYKGV 240 TLHKYGRPDH AGLGQALAQR * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019196497.1 | 4e-69 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
Refseq | XP_021819127.1 | 9e-70 | ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Swissprot | B8AMA9 | 2e-59 | AP22_ORYSI; APETALA2-like protein 2 | ||||
Swissprot | Q84TB5 | 3e-59 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | A0A328DAL6 | 5e-73 | A0A328DAL6_9ASTE; Uncharacterized protein | ||||
STRING | XP_008463879.1 | 2e-67 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 5e-53 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0942s0001.2.p |
Publications ? help Back to Top | |||
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