PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0939s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 143aa MW: 15471.8 Da PI: 9.7662 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 48 | 2.8e-15 | 14 | 93 | 20 | 98 |
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 ++P r+kki+k d+d++++ aea l+s + +lf+ l+ rs a e+kr+ +k + +av+r + dfl+d p Kalax.0939s0015.1.p 14 SFPTGRVKKIMKIDKDINKVNAEALHLISCSTDLFLQFLAERSAAVATEKKRKIVKPEHLRTAVKRHLpTSDFLLDSLPA 93 79***************************************************************975389*****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.22E-17 | 9 | 92 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.3E-20 | 12 | 78 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.4E-18 | 14 | 77 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MAENDSDDHP ITPSFPTGRV KKIMKIDKDI NKVNAEALHL ISCSTDLFLQ FLAERSAAVA 60 TEKKRKIVKP EHLRTAVKRH LPTSDFLLDS LPAPQSLPVV DGPAAEIRAR PAEVKPAPAG 120 TRRIDQIFAK SGKEAAGSII ET* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021280097.1 | 2e-54 | negative cofactor 2 complex subunit alpha | ||||
Refseq | XP_022735299.1 | 2e-54 | nuclear transcription factor Y subunit gamma | ||||
TrEMBL | A0A1R3GQV7 | 6e-56 | A0A1R3GQV7_COCAP; Transcription factor CBF/NF-Y/archaeal histone | ||||
TrEMBL | A0A1R3J013 | 7e-56 | A0A1R3J013_9ROSI; Transcription factor CBF/NF-Y/archaeal histone | ||||
STRING | XP_010044803.1 | 5e-52 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-32 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0939s0015.1.p |