PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0937s0006.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 1290aa MW: 143017 Da PI: 7.364

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0937s0006.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.2e-08	1051	1092	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E e ++d ++G++ +++Ia+++ ++t +c+++++k Kalax.0937s0006.2.p 1051 PWTSDEKETFLDKLVLFGKD-FRKIASYLD-HKTTADCVEFYYK 1092 8***************99.*****.*********98 PP
2	Myb_DNA-binding	25.3	3.6e-08	1207	1249	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE l++avk +G++ ++ +++++ ++ + +ck ++ k+ Kalax.0937s0006.2.p 1207 DWTDEEKHMLLQAVKFYGND-FEMVSEYVK-TKYRDECKTFYSKV 1249 6*****************.****9.********9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.34E-13	1036	1095	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.981	1047	1098	IPR017884	SANT domain
SMART	SM00717	9.8E-8	1048	1096	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-6	1050	1092	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-4	1051	1093	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.683	1203	1254	IPR017884	SANT domain
SMART	SM00717	1.1E-6	1204	1252	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.13E-10	1207	1255	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.9E-6	1207	1252	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-6	1207	1249	IPR001005	SANT/Myb domain
CDD	cd00167	4.15E-5	1208	1250	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1290 aa Download sequence Send to blast
MQFPEPVPWD RKDIYRERRP MKSEPLASSP VASRWRDSSS FSYRGSGPRE FSRRGSADFR 60 RPPSRARQQG DWHMFPEEPS YDYMPSRSCE RMIEDRSYWS SSSRVDGRYR SGKDFYRVRG 120 YPKDWDGYNW QLNSSSSGIS AERPIDGSSI FFGGKPCNGF NDIPFERRRN GMFSGFGAER 180 HFNLAPVNTC GRQNNGFAGA LMEKTRNGFS PRHASDRHIC VSPAVSGDKP SLGFSNASVE 240 KTRNGFSGAP VVKTHNRFSP GLAAGRSITL STSASEDKTS DGISCAPVVT PPNAFPPHIA 300 SDRSNNMSPV VLKPYLTFSD CVVQKIHDGS SDATMEKTDD EFSPSMLSGR SKKLSPSISR 360 DKPRITSSAA PVEKTPNVFF SSSADGDKPC QRLSGTSVEN IYNGLSLSCA SESSYNKSPV 420 ISVDKPFGGV FGASSGKTCD VLAGSAAKNM TRVIVDGMLS SEIHASDCLQ TGSGCPNERV 480 EDSLKYQHYG RIGEVDGLCT VPIHEKENFL GVDWEPLKWT RSGSLSSHVH FGNSRSIPVD 540 SKEAVDESQQ IEGTTLGSPE CESADFVTCS GTSEQAATRK KARLGWGQGL AKYEKKIVDD 600 PCSNELQNEI HNPRVGGECT SPATASATYS SSPDNEYKSF TEGNSSVFSL GDSDNGQSSF 660 EKLDISFITN EVHWLLNLIH SDDQCPTALG SESNNAMCKL LAWKTGILKA VEITDSKMES 720 LESEIESSNS EHRSNFHYPA ASSSLDVNRK TQFNKKSSAC NTSVMPTPLE VDSSEVRDDI 780 DSPGTATSKP LVRSLDAEAT LEVENACLFA KDASPDSRMI VELVPNHGIS CHPVIPCDVH 840 SPEQGSFDPA CPNQDRVDVE EDIRLCKFVF AANKEEAVKA SDELAHLLSK DGTAVVTCQK 900 SPDDLSIRDE IAKRKKMLRF NERAITLKYR SLQQLWKEDA RLLEIRKNRP KSSKRLELGS 960 RTSQYVHLKS NSSIRSRFYS PESRKLVPSS ETISLTSKLL SDCPAKVYRD VLKMPSLILD 1020 EKEKQMSKTV LYNRLEEDPV AVEKERALIN PWTSDEKETF LDKLVLFGKD FRKIASYLDH 1080 KTTADCVEFY YKNHKSALFE RMRKKPLRFG MRSKPIATGT YLLTSGEKWN QESAAADVLA 1140 GICGSLSSEA ISSCVTSSFD QGDVHRQWKH KKVGGKRKRT WTQEVTQSID ETCSGESCGE 1200 MDFSALDWTD EEKHMLLQAV KFYGNDFEMV SEYVKTKYRD ECKTFYSKVK KRLGFTKTAI 1260 TNNPPGIRAN SEQGVDVRLP NSLQVDRVV*

Sequence ? help Back to Top

Protein Sequence Length: 1290 aa Download sequence Send to blast

MQFPEPVPWD RKDIYRERRP MKSEPLASSP VASRWRDSSS FSYRGSGPRE FSRRGSADFR  60
RPPSRARQQG DWHMFPEEPS YDYMPSRSCE RMIEDRSYWS SSSRVDGRYR SGKDFYRVRG  120
YPKDWDGYNW QLNSSSSGIS AERPIDGSSI FFGGKPCNGF NDIPFERRRN GMFSGFGAER  180
HFNLAPVNTC GRQNNGFAGA LMEKTRNGFS PRHASDRHIC VSPAVSGDKP SLGFSNASVE  240
KTRNGFSGAP VVKTHNRFSP GLAAGRSITL STSASEDKTS DGISCAPVVT PPNAFPPHIA  300
SDRSNNMSPV VLKPYLTFSD CVVQKIHDGS SDATMEKTDD EFSPSMLSGR SKKLSPSISR  360
DKPRITSSAA PVEKTPNVFF SSSADGDKPC QRLSGTSVEN IYNGLSLSCA SESSYNKSPV  420
ISVDKPFGGV FGASSGKTCD VLAGSAAKNM TRVIVDGMLS SEIHASDCLQ TGSGCPNERV  480
EDSLKYQHYG RIGEVDGLCT VPIHEKENFL GVDWEPLKWT RSGSLSSHVH FGNSRSIPVD  540
SKEAVDESQQ IEGTTLGSPE CESADFVTCS GTSEQAATRK KARLGWGQGL AKYEKKIVDD  600
PCSNELQNEI HNPRVGGECT SPATASATYS SSPDNEYKSF TEGNSSVFSL GDSDNGQSSF  660
EKLDISFITN EVHWLLNLIH SDDQCPTALG SESNNAMCKL LAWKTGILKA VEITDSKMES  720
LESEIESSNS EHRSNFHYPA ASSSLDVNRK TQFNKKSSAC NTSVMPTPLE VDSSEVRDDI  780
DSPGTATSKP LVRSLDAEAT LEVENACLFA KDASPDSRMI VELVPNHGIS CHPVIPCDVH  840
SPEQGSFDPA CPNQDRVDVE EDIRLCKFVF AANKEEAVKA SDELAHLLSK DGTAVVTCQK  900
SPDDLSIRDE IAKRKKMLRF NERAITLKYR SLQQLWKEDA RLLEIRKNRP KSSKRLELGS  960
RTSQYVHLKS NSSIRSRFYS PESRKLVPSS ETISLTSKLL SDCPAKVYRD VLKMPSLILD  1020
EKEKQMSKTV LYNRLEEDPV AVEKERALIN PWTSDEKETF LDKLVLFGKD FRKIASYLDH  1080
KTTADCVEFY YKNHKSALFE RMRKKPLRFG MRSKPIATGT YLLTSGEKWN QESAAADVLA  1140
GICGSLSSEA ISSCVTSSFD QGDVHRQWKH KKVGGKRKRT WTQEVTQSID ETCSGESCGE  1200
MDFSALDWTD EEKHMLLQAV KFYGNDFEMV SEYVKTKYRD ECKTFYSKVK KRLGFTKTAI  1260
TNNPPGIRAN SEQGVDVRLP NSLQVDRVV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	4e-71	MYB family protein

Link Out ? help Back to Top
Phytozome	Kalax.0937s0006.2.p