PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0937s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 1291aa    MW: 143146 Da    PI: 7.2799
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0937s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.2e-0810521093346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                           +WT +E e ++d   ++G++ +++Ia+++  ++t  +c+++++k
  Kalax.0937s0006.1.p 1052 PWTSDEKETFLDKLVLFGKD-FRKIASYLD-HKTTADCVEFYYK 1093
                           8*****************99.*********.***********98 PP

2Myb_DNA-binding25.33.6e-0812081250347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47  
                            WT eE   l++avk +G++ ++ +++++  ++ + +ck ++ k+
  Kalax.0937s0006.1.p 1208 DWTDEEKHMLLQAVKFYGND-FEMVSEYVK-TKYRDECKTFYSKV 1250
                           6*******************.********9.**********9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.34E-1310371096IPR009057Homeodomain-like
PROSITE profilePS5129314.98110481099IPR017884SANT domain
SMARTSM007179.8E-810491097IPR001005SANT/Myb domain
PfamPF002496.5E-610511093IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-410521094IPR009057Homeodomain-like
PROSITE profilePS5129311.68312041255IPR017884SANT domain
SMARTSM007171.1E-612051253IPR001005SANT/Myb domain
SuperFamilySSF466894.13E-1012081256IPR009057Homeodomain-like
PfamPF002491.5E-612081250IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-612081253IPR009057Homeodomain-like
CDDcd001674.15E-512091251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1291 aa     Download sequence    Send to blast
MQFPEPVPWD RKDIYRERRP MKSEPLASSP VASRWRDSSS FSYRGSGPRE FSRRGSADFR  60
RPPSRARQQG DWHMFPEEPS YDYMPSRSCE RMIEDRSYWS SSSRVDGRYR SGKDFYRVRG  120
YPKDWDGYNW QLNSSSSGIS AERPIDGSSI FFGGKPCNGF NDIPFERRRN GMFSGFGAER  180
HFNLAPVNTC GRQNNGFAGA LMEKTRNGFS PRHASDRHIC VSPAVSGDKP SLGFSNASVE  240
KTRNGFSGAP VVKTHNRFSP GLAAGRSITL STSASEDKTS DGISCAPVVT PPNAFPPHIA  300
SDRSNNMSPV VLKPYLTFSD CVVQKIHDGS SDATMEKTDD EFSPSMLSGR SKKLSPSISR  360
DKPRITSSAA PVEKTPNVFF SSSADGDKPC QRLSGTSVEN IYNGLSLSCA SESSYNKSPV  420
ISVDKPFGGV FGASSGKTCD VLAGSAAKNM TRVIVDGMLS SEIHASDCLQ TGSGCPNERV  480
EDSLKYQHYG RIGEVDGLCT VPIHEKENFL GVDWEPLKWT RSGSLSSHVH FGNSRSIPVD  540
SKEAVDESQQ IEGTTLGSPE CESADFVTCS GTSEQAATRK KARLGWGQGL AKYEKKIVDD  600
PCSNELQNEI HNPRVGGECT SPATASATYS SSPDNEYKSF TEGNSSVFSL GDSDNGQSSF  660
EKLDISFITN EVHWLLNLIH SDDQCPTALG SESNNAMCKL LAWKTGILKA VEITDSKMES  720
LESEIESSNS EHRSNFHYPA ASSSLDVNRK TQFNKKSSAC NTSVMPTPLE VDSSEVRDDI  780
DSPGTATSKP LVRSLDAEAT LEVENACLFA KDASPDSRMI VELVPNHGIS CHPVIPCDVH  840
SPEQGSFDPA CPNQDRVDVE EDIRLCKFVF AANKEEAVKA SDELAHLLSK DGTAVVTCQK  900
SPDDLSIRDE IAKRKKMLRF NERAITLKYR SLQQLWKEDA RLLEIRKNRP KSSKRLELGS  960
RTSQYVHLKS NSSIRSRFYS PEESRKLVPS SETISLTSKL LSDCPAKVYR DVLKMPSLIL  1020
DEKEKQMSKT VLYNRLEEDP VAVEKERALI NPWTSDEKET FLDKLVLFGK DFRKIASYLD  1080
HKTTADCVEF YYKNHKSALF ERMRKKPLRF GMRSKPIATG TYLLTSGEKW NQESAAADVL  1140
AGICGSLSSE AISSCVTSSF DQGDVHRQWK HKKVGGKRKR TWTQEVTQSI DETCSGESCG  1200
EMDFSALDWT DEEKHMLLQA VKFYGNDFEM VSEYVKTKYR DECKTFYSKV KKRLGFTKTA  1260
ITNNPPGIRA NSEQGVDVRL PNSLQVDRVV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.19e-71MYB family protein