PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0924s0005.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TALE

Protein Properties

Length: 689aa MW: 75876 Da PI: 6.9723

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0924s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	488	525	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Kalax.0924s0005.1.p 488 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 525 664559******************************88 PP
2	BELL	122.8	1.4e-39	348	419	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er e+q+kk+kLl +l+eVd+rY++y+eq+q+v++sF+ v+g gsa pYt+lA+ka+SrhFrcLkdaia q+ Kalax.0924s0005.1.p 348 ERVEHQRKKVKLLAMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGSAVPYTALAQKAMSRHFRCLKDAIAAQL 419 688******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.5E-71	264	417	IPR006563	POX domain
Pfam	PF07526	4.8E-52	269	416	IPR006563	POX domain
PROSITE profile	PS50071	12.503	466	529	IPR001356	Homeobox domain
CDD	cd00086	2.14E-12	469	530	No hit	No description
SMART	SM00389	1.2E-9	469	533	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.12E-17	470	536	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-29	472	535	IPR009057	Homeodomain-like
Pfam	PF05920	3.4E-18	486	525	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MSQDYHHQEN IYSFSNGFER SEQQQILREK LGGGAGFPAP DENSGTGIPT VYETAGMLSE 60 MFSYPSGVSS ATQLLQQMGP PGFQDSREVQ PPAIQEWYTD RKDPNILEFR DVSTSDSAHH 120 HHHQQQHHQR QHHQQHQMTA ISVADSAAAA MQLFIMNPQS RSSTSPGQAS APPHSNTLHM 180 LLPNNPNSGE FDTWGGGGGG GEAQGLSLSL ASSLEAAKAE QFFFTQNHHH QQLQQQQQTL 240 HFNHQMNNGL FVGPSTSSPS SSPLTAMNML RNSKYAKPTQ ELLEEFCSVG RGHFKKTKFR 300 NNNKNANPNN PDQTPPPEAA GSGGAGGASS SSTKEGSTAP PPPLSAAERV EHQRKKVKLL 360 AMLDEVDRRY NHYCEQMQMV VNSFDLVMGF GSAVPYTALA QKAMSRHFRC LKDAIAAQLK 420 HSCELLGEKD PAAGGGVTKG ETPRLRILEQ SLRQQRAFHQ MGMMETEAWR PQRGLPERSV 480 NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQEAK 540 EEEASVNPDN NNKNSNEDMN DQDDLLVPSP RQNDPAPTHH YTSASEQHHT GASSRFSVIP 600 QQGPNMVMSA VAAPHGYYHQ RFHVEMMGAD DPRRRDIGGS SAGTSGGYIG GGPGLIRFGT 660 TTTAGDVSLT LGLRQHSGNL PEKNSFFG*

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MSQDYHHQEN IYSFSNGFER SEQQQILREK LGGGAGFPAP DENSGTGIPT VYETAGMLSE  60
MFSYPSGVSS ATQLLQQMGP PGFQDSREVQ PPAIQEWYTD RKDPNILEFR DVSTSDSAHH  120
HHHQQQHHQR QHHQQHQMTA ISVADSAAAA MQLFIMNPQS RSSTSPGQAS APPHSNTLHM  180
LLPNNPNSGE FDTWGGGGGG GEAQGLSLSL ASSLEAAKAE QFFFTQNHHH QQLQQQQQTL  240
HFNHQMNNGL FVGPSTSSPS SSPLTAMNML RNSKYAKPTQ ELLEEFCSVG RGHFKKTKFR  300
NNNKNANPNN PDQTPPPEAA GSGGAGGASS SSTKEGSTAP PPPLSAAERV EHQRKKVKLL  360
AMLDEVDRRY NHYCEQMQMV VNSFDLVMGF GSAVPYTALA QKAMSRHFRC LKDAIAAQLK  420
HSCELLGEKD PAAGGGVTKG ETPRLRILEQ SLRQQRAFHQ MGMMETEAWR PQRGLPERSV  480
NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQEAK  540
EEEASVNPDN NNKNSNEDMN DQDDLLVPSP RQNDPAPTHH YTSASEQHHT GASSRFSVIP  600
QQGPNMVMSA VAAPHGYYHQ RFHVEMMGAD DPRRRDIGGS SAGTSGGYIG GGPGLIRFGT  660
TTTAGDVSLT LGLRQHSGNL PEKNSFFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	475	533	5	63	Homeobox protein Meis2
3k2a_B	2e-16	475	533	5	63	Homeobox protein Meis2
4xrm_A	2e-16	475	533	5	63	Homeobox protein Meis2
4xrm_B	2e-16	475	533	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079108.1	0.0	BEL1-like homeodomain protein 2
Refseq	XP_012079109.1	0.0	BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-151	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A067KJ17	0.0	A0A067KJ17_JATCU; Uncharacterized protein
STRING	cassava4.1_001790m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-130	BEL1-like homeodomain 4

Link Out ? help Back to Top
Phytozome	Kalax.0924s0005.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]