PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0918s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 28179.6 Da PI: 10.3314 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Kalax.0918s0007.1.p 70 YVCSFCKREFRSAQALGGHMNVH 92 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-6 | 67 | 96 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 70 | 97 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.4E-7 | 70 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0047 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0009755 | Biological Process | hormone-mediated signaling pathway | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDNKIGIPLT NINNRSKEYN EESAVGANTN KKGHMKGPWN HFYTSSVYAS EEGHMGLGVS 60 HGLSWPPRLY VCSFCKREFR SAQALGGHMN VHRRDRARLR QSPPSPPMEQ VAGNCPSATT 120 ASADSINLNL TPNPNPSLIY SSTWMIQKPN IKTASFITGS PTIPARKPSA PYLISSSSSG 180 APASRIKRWS GARTNPLTTS TTTTTPNLFN ANNDERQKKK SEVSLNRACE KGGLLRLGFG 240 NGGLSNEDVD LELRLGYSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-12 | 65 | 92 | 2 | 29 | superman protein |
2l1o_A | 2e-12 | 65 | 92 | 2 | 29 | Transcriptional regulator SUPERMAN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 6e-21 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0918s0007.1.p |