PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0916s0011.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 254aa MW: 27637.5 Da PI: 4.565 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 37.3 | 5.7e-12 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l ++ + ++ +t+ ++ +v+r ifdfl ++v + Kalax.0916s0011.2.p 1 MQADEDVGKIAMAVPVLVSKALELFLQDLCDHTYGITVQTGAKTVSSLHLKHCVQRYSIFDFLSEVVSK 69 899*************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.72E-18 | 1 | 71 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.8E-17 | 1 | 68 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-11 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MQADEDVGKI AMAVPVLVSK ALELFLQDLC DHTYGITVQT GAKTVSSLHL KHCVQRYSIF 60 DFLSEVVSKV PDYSHSGTSG EVRTISRRRK AAGDDLTDSD EDSKRSRLPE TGHATGGGRG 120 RGRGRGRGRG RVGRMAEPDN VQHDFEPEAS MVNLDATQAN DSKGRDLLSD VKEEADGLTN 180 PAVGKFDLNA EIKENESMPS SEVPDILSEH AVIKQERIPG WSLSEIDRLN INPLQLGSMN 240 SALDDEDYDE EDG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 129 | RGRGRGRGRG |
2 | 120 | 130 | RGRGRGRGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432367.1 | 3e-70 | dr1-associated corepressor isoform X1 | ||||
Refseq | XP_024040288.1 | 2e-70 | dr1-associated corepressor isoform X2 | ||||
TrEMBL | V4SXS0 | 6e-69 | V4SXS0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006432367.1 | 1e-69 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-53 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0916s0011.2.p |