PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0907s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 310aa    MW: 35159.9 Da    PI: 6.6485
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0907s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.2e-131065148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg.......kgRtlkqcksrwqkyl 48
                         rg W++eEde+l +++ ++Gg+ +W++++ ++        + R +k+c++rw +yl
  Kalax.0907s0007.1.p 10 RGLWSPEEDEKLRNYILRHGGHgSWSSVPVEIVmngkyagLQRNGKSCRLRWINYL 65
                         788******************9********************************97 PP
2Myb_DNA-binding52.31.3e-1671116148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++t+E+e ++ +++ lG++ W+ Ia++++ gRt++++k++w+++l
  Kalax.0907s0007.1.p  71 RGMFSTDEEETIIALHRDLGNK-WSQIAQKLP-GRTDNEIKNYWHTHL 116
                          788*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.566565IPR017930Myb domain
SuperFamilySSF466892.13E-257112IPR009057Homeodomain-like
SMARTSM007173.3E-8967IPR001005SANT/Myb domain
PfamPF002492.1E-111065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-191172IPR009057Homeodomain-like
CDDcd001679.77E-71365No hitNo description
PROSITE profilePS5129425.05366120IPR017930Myb domain
SMARTSM007172.5E-1470118IPR001005SANT/Myb domain
PfamPF002491.9E-1471116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2573119IPR009057Homeodomain-like
CDDcd001673.14E-1174116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGSEKPKHRR GLWSPEEDEK LRNYILRHGG HGSWSSVPVE IVMNGKYAGL QRNGKSCRLR  60
WINYLRPGLK RGMFSTDEEE TIIALHRDLG NKWSQIAQKL PGRTDNEIKN YWHTHLKKRI  120
PGTFSSTPKT SQELINSWST NVSTTFSSPN YSSKPLTQVP SSESFHTFQA SSTTCIEQAV  180
HDRDRHTTLS SDLNGFSNEG IQSSLPNLFF EEWLSLDRTN TSNQQLNPSA DDQLAASILR  240
GDTFMDNEFL QHERLSALDF ESRHGGNWAD DIISYPDLCL DDNLTYGYSN FGISMDHDKC  300
NGFKSAMYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1861203108B-MYB
1h8a_C1e-18612023128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022774162.12e-69transcription factor LAF1-like
TrEMBLA0A4D6UZA52e-68A0A4D6UZA5_9ROSI; MYB transcription factor 4
STRINGGorai.007G011100.11e-66(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.13e-54myb domain protein 18