PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0907s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 352aa    MW: 39410.2 Da    PI: 6.5075
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0907s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.4e-151664148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l  ++ ++Gg+ +W++++ ++g+ R +k+c++rw +yl
  Kalax.0907s0006.1.p 16 KGLWSPEEDEKLRSYILRHGGHgSWSSVPIEIGLQRNGKSCRLRWINYL 64
                         678******************9*************************97 PP
2Myb_DNA-binding513.2e-1670115148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++t+E+e ++ +++ lG++ W+ Ia++++ gRt++++k++w+++l
  Kalax.0907s0006.1.p  70 RGMFSTDEEEMILALHRDLGNK-WSQIAQKLP-GRTDNEIKNYWHTHL 115
                          788*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6441164IPR017930Myb domain
SuperFamilySSF466891.87E-2613111IPR009057Homeodomain-like
SMARTSM007177.7E-101566IPR001005SANT/Myb domain
PfamPF002492.0E-131664IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-201771IPR009057Homeodomain-like
CDDcd001671.04E-81964No hitNo description
PROSITE profilePS5129424.55465119IPR017930Myb domain
SMARTSM007171.7E-1469117IPR001005SANT/Myb domain
PfamPF002495.1E-1470115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2572118IPR009057Homeodomain-like
CDDcd001671.01E-1173115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MALDKPKKVP KPKHRKGLWS PEEDEKLRSY ILRHGGHGSW SSVPIEIGLQ RNGKSCRLRW  60
INYLRPGLKR GMFSTDEEEM ILALHRDLGN KWSQIAQKLP GRTDNEIKNY WHTHLKKRSA  120
RAFSLAPKTL QELIDSWSTS VSSSLSSPSY SSKPLTQVPS LESCHTFQAS SACTEPAVHD  180
HDHHTMLSSG LNGFPNDGIQ SSLPKLFFEE WLSLDRTNTS NQQLNPSDDQ LAASILMGDT  240
FMDNNEFLQH ERSSALDFES GQGGNWANDI VSYPDLCLDG SLADGCFNFG VSNDHDVFLF  300
EEDVARAPSA TTPPLLDLRI RPTSSVATTL YLVPIYLVPA HSHFWDFHLP P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-21121183107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_006490473.11e-70(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.13e-56myb domain protein 18