PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0895s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 339aa    MW: 38312 Da    PI: 8.0874
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0895s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.3e-181562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l ++++ +G+g+W+t ++  g+ R++k+c++rw +yl
  Kalax.0895s0006.1.p 15 KGPWTPEEDQKLTHYIQIHGPGNWRTLPKNAGLERCGKSCRLRWTNYL 62
                         79********************************************97 PP
2Myb_DNA-binding53.65.2e-1768112147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Kalax.0895s0006.1.p  68 RGRFSFEEEEAIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 112
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-24965IPR009057Homeodomain-like
PROSITE profilePS5129418.7311062IPR017930Myb domain
SuperFamilySSF466893.37E-3112109IPR009057Homeodomain-like
SMARTSM007179.1E-151464IPR001005SANT/Myb domain
PfamPF002494.8E-161562IPR001005SANT/Myb domain
CDDcd001674.73E-121762No hitNo description
PROSITE profilePS5129425.44663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2666117IPR009057Homeodomain-like
SMARTSM007172.2E-1667115IPR001005SANT/Myb domain
PfamPF002493.0E-1568112IPR001005SANT/Myb domain
CDDcd001673.17E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRAPCREKR NGLKKGPWTP EEDQKLTHYI QIHGPGNWRT LPKNAGLERC GKSCRLRWTN  60
YLRPDIKRGR FSFEEEEAII QLHSVLGNKW SAIAARLPGR TDNEIKNYWN THIRKRLLRN  120
GIDPVTHAPR IDLIHELTSL LKLNNPALCN QNALLNLSNL LSLNQQIVNP QLLNLATSLL  180
TLKQPQQSLD FLTHNTFQMQ NPNMAHFQQF QLCPSSVNHA QQLMQGGDYN TSNSGAIDMS  240
SKVESFKSSP VISHDTESPS NVGDHFGSGL MYKYGSEPNL SSNWSFQSLN NCSQHKQYSL  300
DSTVSTPNNG STEEERDTYC SNLFNFEIPE GLDMSYLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-29131172105C-Myb DNA-Binding Domain
1msf_C3e-29131172105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371644.11e-110transcription factor MYB41
RefseqXP_028795734.11e-110transcription factor MYB102-like
SwissprotQ9LDR81e-90MY102_ARATH; Transcription factor MYB102
TrEMBLU5FHR21e-109U5FHR2_POPTR; Uncharacterized protein
STRINGPOPTR_0019s14070.11e-109(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.12e-86myb domain protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]