PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0890s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 334aa MW: 35629.9 Da PI: 6.6164 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.1 | 5.8e-19 | 252 | 286 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l Kalax.0890s0005.1.p 252 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 286 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.3E-78 | 4 | 326 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.662 | 246 | 282 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.0E-16 | 246 | 300 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-14 | 248 | 309 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 250 | 284 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.10E-14 | 251 | 299 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 252 | 277 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.1E-17 | 252 | 286 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MECVESALKG SFRKEMTLKL NHQAVIDDLP AAGLTTLTAD DFFVDDLLDF SEINAPDEED 60 NEVVVVADEK DETAKTCPGG LAGGEFGKEK AEACRNLVFK EGELSVPADD VADLEWLSHF 120 VDDSFPGYSL TCPAAPLPAK SCAQPPAPPP PVEASVKPTR ARSKRARNGV LGWSVSGSET 180 SSSTSSSSST SFSSSTTWLI YTNQPSHVDA VLESSAKQAT PRLTSAVKKR KTRPPREAAG 240 GNGGPSAQPR RCSHCGVQKT PQWRAGPLGA KTLCNACGVR FKSGRLLPEY RPACSPTFSS 300 ELHSNHHRKV LEMRYKKELE LPDAGSAPAV PSF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023749186.1 | 9e-84 | GATA transcription factor 6-like | ||||
TrEMBL | A0A2J6M9E4 | 2e-82 | A0A2J6M9E4_LACSA; GATA transcription factor | ||||
STRING | VIT_04s0023g02880.t01 | 6e-82 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 1e-53 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0890s0005.1.p |