PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0890s0002.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SRS

Protein Properties

Length: 305aa MW: 32382.5 Da PI: 8.2296

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0890s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	215.6	1.2e-66	85	234	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstkl 91 g++sCqdCGnqakkdCah+RCRtCC+srgf+C+thvkstWv+a rrerqq+l++++++ +++++ skr re +++sal + + Kalax.0890s0002.1.p 85 GGSISCQDCGNQAKKDCAHSRCRTCCRSRGFECQTHVKSTWVAAPVRRERQQKLSQQQQNPLLRSSSEGSKRLREAgGPSSSSALVHHR- 173 5789******************************************************99999999999999982333333444444. PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + +s+ + +++P+evs++avfrcvrvs++d+ge+++aYqtavsigGhvfkG+LydqGl+ Kalax.0890s0002.1.p 174 -NPSSTGMEVGRTFPAEVSAQAVFRCVRVSAIDEGEDQYAYQTAVSIGGHVFKGLLYDQGLD 234 .333344445566*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.6E-62	87	234	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.8E-25	89	128	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.3E-28	186	233	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MAGLGGGRDR SSSQHHQQAA GAGAPPESWF LYRNPDELSS YRGFELWQQQ QQHQPRNNPS 60 SFGLGIGPDE PHLPTGFAMT RSAGGGSISC QDCGNQAKKD CAHSRCRTCC RSRGFECQTH 120 VKSTWVAAPV RRERQQKLSQ QQQNPLLRSS SEGSKRLREA GGPSSSSALV HHRNPSSTGM 180 EVGRTFPAEV SAQAVFRCVR VSAIDEGEDQ YAYQTAVSIG GHVFKGLLYD QGLDPSSYTP 240 GDSSSVGGGG SSSGGGGGGI QQLNFMSGGA AEATAFIDPS SMYHQSSHSN PFLPSGTQFF 300 PPQR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017969933.1	5e-79	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	K4B6C9	4e-68	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A2G9HE34	8e-81	A0A2G9HE34_9LAMI; Uncharacterized protein
STRING	EOX90942	2e-78	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	6e-59	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Kalax.0890s0002.1.p

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]