PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0888s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23136 Da PI: 6.7183 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.8e-20 | 28 | 76 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ ++r++lg+f+ta+eAa+a++aa+++++g Kalax.0888s0005.1.p 28 FRGVRKRP-WGRYAAEIRDpFK----KTRVWLGTFDTADEAARAYDAAARSFRG 76 8*******.**********662....5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.56E-20 | 27 | 84 | No hit | No description |
Pfam | PF00847 | 2.6E-13 | 27 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.644 | 27 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-37 | 27 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-31 | 28 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-22 | 28 | 85 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.8E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MRKVKVAAVA GHDHAGPEMR DPESEIRFRG VRKRPWGRYA AEIRDPFKKT RVWLGTFDTA 60 DEAARAYDAA ARSFRGPKAR TNFPFPSSPP LHPPVTPNPL PPPPLSYHNP AHMFTAQYIH 120 RPASSSMSST VETFSGPKLS NPLAALPSTR VLFHQPVPEE GPDCHSDCDS SSSVVNFEEG 180 GAWGVPDLNL PPPMDDADMN CDDLDATALR L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 27 | 84 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022947976.1 | 5e-47 | ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_022970780.1 | 5e-47 | ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_022970781.1 | 5e-47 | ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_023534086.1 | 5e-47 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9FE67 | 1e-31 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | A0A0V0HV08 | 1e-48 | A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like | ||||
STRING | XP_008456400.1 | 9e-45 | (Cucumis melo) | ||||
STRING | XP_004143195.1 | 9e-45 | (Cucumis sativus) | ||||
STRING | XP_004172004.1 | 9e-45 | (Cucumis sativus) | ||||
STRING | Migut.M01719.1.p | 1e-44 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 6e-21 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0888s0005.1.p |
Publications ? help Back to Top | |||
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