PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0886s0003.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 251aa MW: 27323.4 Da PI: 6.3037 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27.5 | 7e-09 | 88 | 135 | 4 | 51 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+ + Le+++ L a N++L k+l+ Kalax.0886s0003.2.p 88 NKGKKRPLGNREAVRKYREKKKARAASLEDEIVRLRAVNQQLLKRLQG 135 577899999**********************************99975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.6E-13 | 81 | 153 | No hit | No description |
SMART | SM00338 | 5.9E-10 | 85 | 152 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.3E-13 | 87 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.772 | 87 | 134 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.13E-7 | 90 | 134 | No hit | No description |
CDD | cd14686 | 1.11E-11 | 91 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MDDGELDFSN HEMFSSSDLG DFPNNCSMDT FLDEILKDSH ACTHTHTCNP PGPDSSHTHT 60 CFHVHTKIVP ASNEEKPGSE DTAESAENKG KKRPLGNREA VRKYREKKKA RAASLEDEIV 120 RLRAVNQQLL KRLQGQAVLE AEIARLKCLL VDIRGRIEGE IGSFPYQKPA IPANINPNYA 180 SGYAANPCNI QCNDQLYCGI AGLQSGDFDG CDFENLQCVS SPVSELKDII AGSSVKNKRK 240 GGNRGTNASS * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015714.1 | 1e-126 | basic leucine zipper 19 isoform X4 | ||||
Swissprot | Q8VY76 | 1e-109 | BZP19_ARATH; Basic leucine zipper 19 | ||||
TrEMBL | B9T7C9 | 1e-123 | B9T7C9_RICCO; DNA binding protein, putative | ||||
STRING | XP_002534148.1 | 1e-124 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35040.1 | 2e-97 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0886s0003.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|