PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0878s0002.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 591aa MW: 65652 Da PI: 6.4275 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 426.3 | 2.5e-130 | 220 | 589 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL++cA+a+++ +++ ++l++r ++ ++ +g+p+qRl +y++e+L ar s++++y++l+++e + s+e l+++++++ev+P+ Kalax.0878s0002.2.p 220 LKQLLIACAKAMAEYNMADFDRLIERARNAVNISGEPIQRLGTYMVEGLTARKEASGNKIYHTLKCREPE---SEELLTYMHILYEVCPY 306 689******************************************************************9...9999************* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 lkf++++aN aI ea +e+++Hi+Df+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s + l+++g+rLa + +++++p+ef Kalax.0878s0002.2.p 307 LKFGYMAANGAIAEACRNENHIHIVDFQIAQGTQWITLLQALAARPGGPPHVRITGIDDPVSRhaRGACLNAVGRRLALISQKFNIPVEF 396 ***********************************************************9998888999********************* PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 ++ v d+++e+L+v++gEalaVn+ lqlh+++desv+++++rd +L++vksl+Pkvv+++eqe+++n+++F++rfle+l+yysa+f Kalax.0878s0002.2.p 397 HP-VPVFAPDITMEMLDVRSGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLNPKVVTLIEQESNTNTTPFFNRFLETLDYYSAMF 485 **.6888999******************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 +s+++++pr+s+eri+vE ++l+r+ vn++aceg+er+erhe l+kW++r+++aGF++ pls+++++ + +ll+ ++ + y++ee++g++ Kalax.0878s0002.2.p 486 ESIDVTMPRDSKERINVEMHCLARDMVNIIACEGKERVERHELLGKWKSRFTMAGFRQFPLSTYVNSVIGSLLKCYS-EHYTLEERDGAM 574 *************************************************************************9988.66********** PP GRAS 359 vlgWkdrpLvsvSaW 373 +lgWk+r+Lvs+SaW Kalax.0878s0002.2.p 575 LLGWKRRNLVSASAW 589 *************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.1 | 194 | 571 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.5E-128 | 220 | 589 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MESHHLFGYT VTGIANTSYT NSHPGATSIP PKLFNSIKVE VGNSPNSPFS SQFDSESFAT 60 ASDCKEQHSS TETPSRLSPP SSNSSLETSN YIHCLSPSVD ACGGRQLPYS AGRYSAAQDA 120 YGSQSVAYTL QELESALMAL DGEGEETKTP DTSVGGNSQP RNPTVGSTAW SLEVQQTSQV 180 AQPQYVLPSR FRMTNPDVRF ERHHKGMEEA SFQGFPPGNL KQLLIACAKA MAEYNMADFD 240 RLIERARNAV NISGEPIQRL GTYMVEGLTA RKEASGNKIY HTLKCREPES EELLTYMHIL 300 YEVCPYLKFG YMAANGAIAE ACRNENHIHI VDFQIAQGTQ WITLLQALAA RPGGPPHVRI 360 TGIDDPVSRH ARGACLNAVG RRLALISQKF NIPVEFHPVP VFAPDITMEM LDVRSGEALA 420 VNFPLQLHHT PDESVDVNNP RDGLLRMVKS LNPKVVTLIE QESNTNTTPF FNRFLETLDY 480 YSAMFESIDV TMPRDSKERI NVEMHCLARD MVNIIACEGK ERVERHELLG KWKSRFTMAG 540 FRQFPLSTYV NSVIGSLLKC YSEHYTLEER DGAMLLGWKR RNLVSASAWH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-59 | 222 | 590 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022716979.1 | 0.0 | LOW QUALITY PROTEIN: scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A1R3KBY4 | 0.0 | A0A1R3KBY4_9ROSI; Transcription factor GRAS | ||||
STRING | XP_008244327.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-175 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0878s0002.2.p |
Publications ? help Back to Top | |||
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