PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0878s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 591aa    MW: 65652 Da    PI: 6.4275
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0878s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.32.5e-1302205891373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA+a+++ +++  ++l++r ++ ++ +g+p+qRl +y++e+L ar   s++++y++l+++e +   s+e l+++++++ev+P+
  Kalax.0878s0002.1.p 220 LKQLLIACAKAMAEYNMADFDRLIERARNAVNISGEPIQRLGTYMVEGLTARKEASGNKIYHTLKCREPE---SEELLTYMHILYEVCPY 306
                          689******************************************************************9...9999************* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          lkf++++aN aI ea  +e+++Hi+Df+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s   +   l+++g+rLa + +++++p+ef
  Kalax.0878s0002.1.p 307 LKFGYMAANGAIAEACRNENHIHIVDFQIAQGTQWITLLQALAARPGGPPHVRITGIDDPVSRhaRGACLNAVGRRLALISQKFNIPVEF 396
                          ***********************************************************9998888999********************* PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ v     d+++e+L+v++gEalaVn+ lqlh+++desv+++++rd +L++vksl+Pkvv+++eqe+++n+++F++rfle+l+yysa+f
  Kalax.0878s0002.1.p 397 HP-VPVFAPDITMEMLDVRSGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLNPKVVTLIEQESNTNTTPFFNRFLETLDYYSAMF 485
                          **.6888999******************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s+++++pr+s+eri+vE ++l+r+ vn++aceg+er+erhe l+kW++r+++aGF++ pls+++++ + +ll+ ++ + y++ee++g++
  Kalax.0878s0002.1.p 486 ESIDVTMPRDSKERINVEMHCLARDMVNIIACEGKERVERHELLGKWKSRFTMAGFRQFPLSTYVNSVIGSLLKCYS-EHYTLEERDGAM 574
                          *************************************************************************9988.66********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +lgWk+r+Lvs+SaW
  Kalax.0878s0002.1.p 575 LLGWKRRNLVSASAW 589
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.1194571IPR005202Transcription factor GRAS
PfamPF035148.5E-128220589IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MESHHLFGYT VTGIANTSYT NSHPGATSIP PKLFNSIKVE VGNSPNSPFS SQFDSESFAT  60
ASDCKEQHSS TETPSRLSPP SSNSSLETSN YIHCLSPSVD ACGGRQLPYS AGRYSAAQDA  120
YGSQSVAYTL QELESALMAL DGEGEETKTP DTSVGGNSQP RNPTVGSTAW SLEVQQTSQV  180
AQPQYVLPSR FRMTNPDVRF ERHHKGMEEA SFQGFPPGNL KQLLIACAKA MAEYNMADFD  240
RLIERARNAV NISGEPIQRL GTYMVEGLTA RKEASGNKIY HTLKCREPES EELLTYMHIL  300
YEVCPYLKFG YMAANGAIAE ACRNENHIHI VDFQIAQGTQ WITLLQALAA RPGGPPHVRI  360
TGIDDPVSRH ARGACLNAVG RRLALISQKF NIPVEFHPVP VFAPDITMEM LDVRSGEALA  420
VNFPLQLHHT PDESVDVNNP RDGLLRMVKS LNPKVVTLIE QESNTNTTPF FNRFLETLDY  480
YSAMFESIDV TMPRDSKERI NVEMHCLARD MVNIIACEGK ERVERHELLG KWKSRFTMAG  540
FRQFPLSTYV NSVIGSLLKC YSEHYTLEER DGAMLLGWKR RNLVSASAWH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-592225906375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022716979.10.0LOW QUALITY PROTEIN: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1R3KBY40.0A0A1R3KBY4_9ROSI; Transcription factor GRAS
STRINGXP_008244327.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-175GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]