PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0874s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 140aa MW: 15157.3 Da PI: 8.8302

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0874s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.5	3.6e-41	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+l+r+C++ C++apyf +++p kfa vhk+FGasnv+k+l+++pee+r++++++lvyeAear++dPvyG++g i +lq++l++l Kalax.0874s0008.1.p 14 SCAACKLLKRRCSPTCIFAPYFRSDDPTKFAKVHKVFGASNVSKILSEVPEEQRQETVNTLVYEAEARLEDPVYGCIGAIAALQRKLAEL 103 6*************************************************************************************** PP DUF260 91 kaelallkee 100 + +l+ ++++ Kalax.0874s0008.1.p 104 QRDLSIARAR 113 **998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.624	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.7E-41	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MRKTSLHEPR AASSCAACKL LKRRCSPTCI FAPYFRSDDP TKFAKVHKVF GASNVSKILS 60 EVPEEQRQET VNTLVYEAEA RLEDPVYGCI GAIAALQRKL AELQRDLSIA RARLAGYGAC 120 LSNASSSNVG LSTASFPFE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-44	9	117	6	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-44	9	117	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021626383.1	1e-65	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	4e-62	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2C9V3U2	2e-64	A0A2C9V3U2_MANES; Uncharacterized protein
STRING	cassava4.1_029097m	4e-65	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-64	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Kalax.0874s0008.1.p

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]