PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0868s0023.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 25722.5 Da PI: 10.4312 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50 | 5.4e-16 | 129 | 218 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k ++ps+v+ +l l +f+++h + ++ ++tl de+ +++ + ++ + l +GWk+F+ a++L +gD +vF+l++ + f Kalax.0868s0023.3.p 129 FVKPMLPSHVSGGFWLGLNVSFCKRHLPN--RDSEVTLIDEDDEEYPTVY--LPRKTG--LNGGWKGFAVAHDLTDGDALVFQLIKPTAF 212 89************************533..5569***************..555544..************************997888 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v + r Kalax.0868s0023.3.p 213 --KVYITR 218 ..776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-21 | 121 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-24 | 122 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.11E-26 | 127 | 218 | No hit | No description |
PROSITE profile | PS50863 | 11.096 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-13 | 129 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-22 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MVQPEYEQSR QKRLEENRKR MEALNLPQLS QALRQFSPGL ATPPMKQRKP RTLEKKTVPV 60 RRSDRLSGKP GPVYLGVDVA RYERVTIPRR VSKARDLSNR VYASEDERSY SIKKAVEVQA 120 ALDPTHPSFV KPMLPSHVSG GFWLGLNVSF CKRHLPNRDS EVTLIDEDDE EYPTVYLPRK 180 TGLNGGWKGF AVAHDLTDGD ALVFQLIKPT AFKVYITRAS GFKKTAA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022772861.1 | 3e-96 | B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 4e-72 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A067GWZ4 | 3e-93 | A0A067GWZ4_CITSI; Uncharacterized protein | ||||
STRING | XP_006473345.1 | 3e-94 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-74 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0868s0023.3.p |
Publications ? help Back to Top | |||
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