PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0868s0023.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 228aa    MW: 25722.5 Da    PI: 10.4312
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0868s0023.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.4e-16129218198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k ++ps+v+   +l l  +f+++h  +  ++ ++tl de+ +++   +    ++ +  l +GWk+F+ a++L +gD +vF+l++ + f
  Kalax.0868s0023.2.p 129 FVKPMLPSHVSGGFWLGLNVSFCKRHLPN--RDSEVTLIDEDDEEYPTVY--LPRKTG--LNGGWKGFAVAHDLTDGDALVFQLIKPTAF 212
                          89************************533..5569***************..555544..************************997888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v + r
  Kalax.0868s0023.2.p 213 --KVYITR 218
                          ..776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-21121220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-24122221IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-26127218No hitNo description
PROSITE profilePS5086311.096129220IPR003340B3 DNA binding domain
PfamPF023621.3E-13129218IPR003340B3 DNA binding domain
SMARTSM010194.5E-22129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVQPEYEQSR QKRLEENRKR MEALNLPQLS QALRQFSPGL ATPPMKQRKP RTLEKKTVPV  60
RRSDRLSGKP GPVYLGVDVA RYERVTIPRR VSKARDLSNR VYASEDERSY SIKKAVEVQA  120
ALDPTHPSFV KPMLPSHVSG GFWLGLNVSF CKRHLPNRDS EVTLIDEDDE EYPTVYLPRK  180
TGLNGGWKGF AVAHDLTDGD ALVFQLIKPT AFKVYITRAS GFKKTAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022772861.13e-96B3 domain-containing protein At5g42700
SwissprotQ9FMZ44e-72Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A067GWZ43e-93A0A067GWZ4_CITSI; Uncharacterized protein
STRINGXP_006473345.13e-94(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-74B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]