PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0866s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 152aa    MW: 17426 Da    PI: 10.874
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0866s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.5e-13546748
                         HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         e de+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  Kalax.0866s0004.1.p  5 EKDEKLLRHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 46
                         559*************************************97 PP
2Myb_DNA-binding33.11.3e-105295146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         rg+++++E+ l+++++  lG++ W+ I + ++  Rt +++k+ w++
  Kalax.0866s0004.1.p 52 RGAFSQQEETLIINLHDVLGNR-WSQITAQLP-CRTNNEIKNLWNS 95
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.009146IPR017930Myb domain
SMARTSM007170.0074348IPR001005SANT/Myb domain
CDDcd001671.26E-7346No hitNo description
SuperFamilySSF466891.64E-23393IPR009057Homeodomain-like
PfamPF002491.5E-10546IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-19549IPR009057Homeodomain-like
PROSITE profilePS5129419.52547101IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-215099IPR009057Homeodomain-like
SMARTSM007172.5E-65199IPR001005SANT/Myb domain
PfamPF002494.8E-95296IPR001005SANT/Myb domain
CDDcd001674.21E-45494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
LRSLEKDEKL LRHITKYGHG CWSSVPKLAG LQRCGKSCRL RWINYLRPEL KRGAFSQQEE  60
TLIINLHDVL GNRWSQITAQ LPCRTNNEIK NLWNSCLKKL RQRGIDLDTH KPLFSDPIKA  120
SLDTTRPVSS SRASSSTLRT TSRATSGSFF WT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2459913106B-MYB
1h8a_C8e-2459933126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020272342.12e-64transcription factor MYB86-like
SwissprotQ8VZQ28e-61MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A2I0B5G11e-63A0A2I0B5G1_9ASPA; Transcription factor MYB86
STRINGPOPTR_0014s10680.12e-63(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-62myb domain protein 55
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]