PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0863s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 306aa    MW: 33583.9 Da    PI: 5.2905
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0863s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.5e-20159209255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp+++g  +r++lg+f+ta +Aaka+++a+ kl+g
  Kalax.0863s0003.1.p 159 HYRGVRRRP-WGKFAAEIRDPNKRG--ARVWLGTFDTAIDAAKAYDRAAFKLRG 209
                          7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-32158218IPR001471AP2/ERF domain
PROSITE profilePS5103224.474159217IPR001471AP2/ERF domain
CDDcd000183.13E-30159217No hitNo description
PfamPF008475.8E-14159209IPR001471AP2/ERF domain
SMARTSM003808.0E-37159223IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22159219IPR016177DNA-binding domain
PRINTSPR003671.7E-13160171IPR001471AP2/ERF domain
PRINTSPR003671.7E-13199219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MATPSEVSTL EQIRQHLFGG LLYPVNLKTF GSGSGSDSSE SVITTSTDSP VSFSNCGTFS  60
KLESCNSFEF DQLPSEYFSF ETKFEATGFD FAPEAEVINL VETLNKKSQI RTSIPSRKPS  120
LNISLPDKTE WLDLTQPRPA PPTAVPSKPE KAVADDDRHY RGVRRRPWGK FAAEIRDPNK  180
RGARVWLGTF DTAIDAAKAY DRAAFKLRGS KAILNFPLEI AASCSAGDTA GVVDCGRKRR  240
IRDEEVEVEV KKVKAEEAVA EASTPTSWMA FWDFDETEMR GIFNVPPLSP LSPHPALGLA  300
QLMVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-30158220466ATERF1
3gcc_A2e-30158220466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070058.13e-69ethylene-responsive transcription factor 5
TrEMBLA0A067L5Z57e-68A0A067L5Z5_JATCU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-41ethylene responsive element binding factor 5