PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0859s0012.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 451aa MW: 48949.8 Da PI: 6.6475 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.4 | 2e-30 | 204 | 262 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gC+v+k+v+r+aed +++++tYeg+Hnh+ Kalax.0859s0012.2.p 204 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCTVRKQVQRCAEDRTILITTYEGNHNHP 262 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-33 | 188 | 264 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.29E-27 | 196 | 264 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.643 | 198 | 264 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-36 | 203 | 263 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-26 | 205 | 262 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MVDDGSSPAT DDTRAKNEIV MLRAEIERVD RENQELKEML SHVTKSYSTM QVHLMTLMEE 60 SQKKDAHAQQ QLHVKHRQGD KQQIEVGTSR LVQKQLVVDL GLVPASDIHD QQSLSSSENN 120 EDGRSNSPPT NLEVASRLQM EEEAEITRRE ISMGMGREEE AVHVLPNKVP RFNPSKTNNA 180 DQAEATMRKA RVSVRARSEA TMITDGCQWR KYGQKMAKGN PCPRAYYRCT MAAGCTVRKQ 240 VQRCAEDRTI LITTYEGNHN HPLPPAAMAM ASTTSSAAHM LLSGSMSSTD GLMNPNFLAR 300 TLLPCSSNMA TISASAPFPT VTLDLTQDPN AATQSPPNTI QSQFQNPSQN LALLPQLFTQ 360 TLYNQSMFSG LQMSQHRDSS LGPKQQGPLA DSVTAAAIAA DPNFTAVIAA AISSMIGNSH 420 PINNITTNSS NSNGNNSGAN IVSSSGIPEN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-22 | 194 | 264 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-22 | 194 | 264 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002269696.2 | 1e-164 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-119 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A438DTU4 | 1e-163 | A0A438DTU4_VITVI; WRKY transcription factor 6 | ||||
STRING | VIT_12s0059g00880.t01 | 1e-163 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-105 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0859s0012.2.p |