PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0859s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 572aa    MW: 62559.3 Da    PI: 6.2974
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0859s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30325383259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+ kg+++pr+YYrCt+a gC+v+k+v+r+aed +++++tYeg+Hnh+
  Kalax.0859s0012.1.p 325 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCTVRKQVQRCAEDRTILITTYEGNHNHP 383
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-33309385IPR003657WRKY domain
SuperFamilySSF1182901.83E-27317385IPR003657WRKY domain
PROSITE profilePS5081129.643319385IPR003657WRKY domain
SMARTSM007746.8E-36324384IPR003657WRKY domain
PfamPF031065.0E-26326383IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MDTTATITTL NNATTRPPSN PSPSIHFPLN LNHMNQQHDD HVDLRLNSNN DHHHQHGVID  60
EMDFFADDRT NKDGSNKQQA CTDFDHQNMT TPPADHQSTH FNYVNTGLHL LTANTSTTDQ  120
SMVDDGSSPA TDDTRAKNEI VMLRAEIERV DRENQELKEM LSHVTKSYST MQVHLMTLME  180
ESQKKDAHAQ QQLHVKHRQG DKQQIEVGTS RLVQKQLVVD LGLVPASDIH DQQSLSSSEN  240
NEDGRSNSPP TNLEVASRLQ MEEEAEITRR EISMGMGREE EAVHVLPNKV PRFNPSKTNN  300
ADQAEATMRK ARVSVRARSE ATMITDGCQW RKYGQKMAKG NPCPRAYYRC TMAAGCTVRK  360
QVQRCAEDRT ILITTYEGNH NHPLPPAAMA MASTTSSAAH MLLSGSMSST DGLMNPNFLA  420
RTLLPCSSNM ATISASAPFP TVTLDLTQDP NAATQSPPNT IQSQFQNPSQ NLALLPQLFT  480
QTLYNQSMFS GLQMSQHRDS SLGPKQQGPL ADSVTAAAIA ADPNFTAVIA AAISSMIGNS  540
HPINNITTNS SNSNGNNSGA NIVSSSGIPE N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21315385877Probable WRKY transcription factor 4
2lex_A2e-21315385877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921697.11e-179probable WRKY transcription factor 31
TrEMBLA0A438IL691e-178A0A438IL69_VITVI; WRKY transcription factor 6
STRINGVIT_12s0059g00880.t011e-178(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-114WRKY family protein