PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0855s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 239aa    MW: 26864.6 Da    PI: 5.0403
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0855s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-16105155255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrd      k  r++lg+f+++ +Aaka++ a+ k++g
  Kalax.0855s0013.1.p 105 HYRGVRRRP-WGKFAAEIRDH---ArKGSRVWLGTFDSEVDAAKAYDFAAFKMRG 155
                          8********.**********4...3345**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.62E-28104163No hitNo description
Gene3DG3DSA:3.30.730.109.0E-30104164IPR001471AP2/ERF domain
PfamPF008471.5E-11105155IPR001471AP2/ERF domain
PROSITE profilePS5103223.314105163IPR001471AP2/ERF domain
SMARTSM003802.0E-35105169IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22105164IPR016177DNA-binding domain
PRINTSPR003674.3E-13106117IPR001471AP2/ERF domain
PRINTSPR003674.3E-13145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MMDETSTLDL IRSHLLADFA STESFISSLH SDLLLDSTTG PYDAPFWSLF PVKPETDTDY  60
NYNLLEFIKP EFFDIAPSQR EDTGKTSSSD SSRTQTTSLP LDRKHYRGVR RRPWGKFAAE  120
IRDHARKGSR VWLGTFDSEV DAAKAYDFAA FKMRGSKAIL NFPLQAGKEE GPPENSGRRR  180
RRRRDSRAET TATESAAASS SSCFNNNDED NNIEPWTPSS ESLSYTTTMT MEDQMLLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-28104170470ATERF1
3gcc_A4e-28104170470ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183RRRRRRR
2177184RRRRRRRD
3178186RRRRRRDSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BQJ31e-52A0A2P5BQJ3_PARAD; AP2/ERF transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.14e-28ERF family protein