PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0854s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 285aa    MW: 31131.9 Da    PI: 9.5564
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0854s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.39e-293786357
          ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                         +  YkeC+kNhAa++Ggha+DGCgE+mp       + +lkCaACgCHRnFHR e+
  Kalax.0854s0002.1.p 37 TSSYKECQKNHAAAIGGHALDGCGEYMPP-----PQPSLKCAACGCHRNFHRLET 86
                         678*************************9.....3469**************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-153785IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.8E-243985IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.1344085IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.8E-264085IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.45E-17172236IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-27173236IPR009057Homeodomain-like
TIGRFAMsTIGR015659.5E-26178234IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKMSSDQQAQ AQQLCFKALS FSGKKERSRN EQREHETSSY KECQKNHAAA IGGHALDGCG  60
EYMPPPQPSL KCAACGCHRN FHRLETPSAA ARVEARTIAA APIFSHPPRR FSSASPSSSS  120
SPSRSEAPIS SIYPSAPQIL MSLSSGVEMT SAHAAAPATA PDPIKLCFDE DVKTDKPKKR  180
FRTKFSAEQK EKMRRFAEGF GWRMQRTNDD AVKRFCDEIG VCRSVLKVWM HNNRSRNLTG  240
INRSNNFEYN GGGLTGGRLD SEEMHVVGNN GRIQSTDGGS SSSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-201792351874ZF-HD homeobox family protein
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-41zinc finger homeodomain 1