PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0854s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 390aa MW: 43557.9 Da PI: 7.1687 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.7 | 4e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + pGfrFhPtdeelv +yLk+k+++++l + e ik++diyk++PwdLpk +++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+ Kalax.0854s0001.1.p 14 MLPGFRFHPTDEELVAFYLKRKIQQRPLAI-ELIKQLDIYKHDPWDLPKLGATGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR 102 579************************999.89***************87778999********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl Kalax.0854s0001.1.p 103 PIYSSeGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 ****956667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 56.38 | 14 | 172 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.28E-57 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MDERNDGDKI DEIMLPGFRF HPTDEELVAF YLKRKIQQRP LAIELIKQLD IYKHDPWDLP 60 KLGATGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSLVDSVHP KRFIDKTIPA NDAWAICRIF KKTNTTAQRA 180 ASHSWVSPAS PDYLMPAGGQ SSQFSSTERS IISMTPKPSP NFPFSYDTFL HQQQSCGTAF 240 SPPDLGYYKS INSTSHIPST NAEPSILNNL VFPPHDNSGI STMLFNISSS LTTAEELSIA 300 AASDSSEFAD FPSSLPQGLL HNNEHHLSEL LKHENGSYGG ANIDDAWNLL HPGFGFNVNN 360 PPSEASKSNL VWDSSPCPSE MSTNYKCFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 16 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 16 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 16 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 16 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-52 | 16 | 179 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 16 | 179 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 16 | 179 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 16 | 179 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 16 | 179 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 16 | 179 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 16 | 179 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 16 | 179 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-52 | 16 | 179 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 16 | 179 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270334.1 | 1e-147 | PREDICTED: protein FEZ | ||||
Swissprot | Q9ZVH0 | 1e-107 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | F6HPC3 | 1e-146 | F6HPC3_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0026g02360.t01 | 1e-147 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-109 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0854s0001.1.p |
Publications ? help Back to Top | |||
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