PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0847s0017.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 287aa    MW: 32204.7 Da    PI: 9.2918
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0847s0017.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.41.4e-28126184259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkk+v+rs ed+ ++++ Yeg+Hnh 
  Kalax.0847s0017.2.p 126 RDGYQWRKYGQKVTKDNPSPRAYFRCAMApTCPVKKRVQRSVEDEMILVVSYEGHHNHG 184
                          7***************************99****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-27120185IPR003657WRKY domain
SuperFamilySSF1182903.14E-24122184IPR003657WRKY domain
SMARTSM007741.7E-32125185IPR003657WRKY domain
PfamPF031061.5E-23127183IPR003657WRKY domain
PROSITE profilePS5081124.363127186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDRVAAISSR KITMDEGVVE EMRKENARLR NIVKHLQGEA DDGMSRKRRA AAAALDDDYQ  60
LIMMQPYGGS SSMSDDYCYG ASAMMNNGVK RPRMMRGLQV PTMGGSKAYQ MFVRTHDNKD  120
KSLTVRDGYQ WRKYGQKVTK DNPSPRAYFR CAMAPTCPVK KRVQRSVEDE MILVVSYEGH  180
HNHGKITPEP ECLPIQAPEN GATIHMSPFD RPAVTLDLSL SGPSSSGKSD QETRSCRRNL  240
FNKSDEFMNE EIVKEYVASL TRDPNFSMAL AMAVVRSIPD MSARRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-181251831471WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007011726.26e-51PREDICTED: probable WRKY transcription factor 40
RefseqXP_012443387.15e-51PREDICTED: probable WRKY transcription factor 40
RefseqXP_016689438.14e-51PREDICTED: probable WRKY transcription factor 40
STRINGGorai.009G062400.12e-50(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.22e-37WRKY DNA-binding protein 18