PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0847s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 289aa MW: 32493.1 Da PI: 8.8937 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.4 | 1.4e-28 | 128 | 186 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkk+v+rs ed+ ++++ Yeg+Hnh Kalax.0847s0017.1.p 128 RDGYQWRKYGQKVTKDNPSPRAYFRCAMApTCPVKKRVQRSVEDEMILVVSYEGHHNHG 186 7***************************99****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-27 | 122 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-24 | 124 | 186 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-32 | 127 | 187 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.363 | 129 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-23 | 129 | 185 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MRVSNLLDSE MVKITMDEGV VEEMRKENAR LRNIVKHLQG EADDGMSRKR RAAAAALDDD 60 YQLIMMQPYG GSSSMSDDYC YGASAMMNNG VKRPRMMRGL QVPTMGGSKA YQMFVRTHDN 120 KDKSLTVRDG YQWRKYGQKV TKDNPSPRAY FRCAMAPTCP VKKRVQRSVE DEMILVVSYE 180 GHHNHGKITP EPECLPIQAP ENGATIHMSP FDRPAVTLDL SLSGPSSSGK SDQETRSCRR 240 NLFNKSDEFM NEEIVKEYVA SLTRDPNFSM ALAMAVVRSI PDMSARRM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-18 | 127 | 185 | 14 | 71 | WRKY transcription factor 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016689438.1 | 4e-51 | PREDICTED: probable WRKY transcription factor 40 | ||||
STRING | Gorai.009G062400.1 | 2e-50 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.2 | 2e-37 | WRKY DNA-binding protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0847s0017.1.p |