PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0831s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 407aa    MW: 43454.6 Da    PI: 9.2854
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0831s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.33.4e-3885145262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          +e  lkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+n k+s
  Kalax.0831s0001.1.p  85 PEPGLKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNSKRS 145
                          56789***************************************************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3669143IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.36689143IPR003851Zinc finger, Dof-type
PfamPF027019.3E-3289143IPR003851Zinc finger, Dof-type
PROSITE patternPS01361091127IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MVFSSVPLYL DPHNWHHHQQ QQQQAQLHQQ LSGGGHGGGD NPHPQNHQIG AQMPPPGASQ  60
AVGASSSIRP GSMADRARQA KIPQPEPGLK CPRCDSTNTK FCYFNNYSLT QPRHFCKTCR  120
RYWTRGGALR NVPVGGGCRR NSKRSGKPKA LGGERQAGAG PVNNNNSTSP ISSNSNNNDM  180
NNNSNLLDSI SHQNSFHHQP RLAQFPLLAS LQGLAAHGQY TSPSSNIGLN FGGMMNSNAA  240
QGELGFQIGA SSGASDQWRP HHFPNFLAGF DPPQLPHPPS SASLFQFPID HQSMDQAAAA  300
NPHTAPRTTS ISSAVNQQQP ASRPSSMPSN NDQQNNEAAA AVKAEEAAGQ QGGLNMNMNM  360
NLLSRSFLGM PDNSNGQYWI GSSNNNSNAT SWTDLSGLNS STTSLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-46OBF-binding protein 3