PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0828s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 298aa    MW: 33519.2 Da    PI: 10.1341
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0828s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.8e-24218262145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrC+RtDGKkWRC +++++ +k+CE+Hlhrgr+rsrk +++
  Kalax.0828s0011.1.p 218 DPEPGRCKRTDGKKWRCAKEAMPEYKYCEKHLHRGRHRSRKLVDP 262
                          79***************************************9987 PP
2QLQ36.41.6e-13152186337
                  QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          FT +Q q+L++Q+ +++y+ a+++vP  Ll +i+k
  Kalax.0828s0011.1.p 152 FTFMQRQELEQQACIFRYIEAGAQVPYPLLYPIWK 186
                          9********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5166617.026151186IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.6E-9152185IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.773218262IPR014977WRC domain
PfamPF088793.6E-20219260IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAVSPRESGE ERETEMGPAQ GVTLEGPAKR QRFDGNTRAD GSDTSLLYPI KTNKSELRNR  60
VFRAFHQFPR THTLIQISPP RISKKMVDSA TQVSRLPDGA ETGIDLGLEL GLGSNFEAEM  120
RKYKERVVVV LDNEEDDDDR RRKKRVRVPM GFTFMQRQEL EQQACIFRYI EAGAQVPYPL  180
LYPIWKSVAG SADRCRLPFI PNLFAGPVGL SWKQGRSDPE PGRCKRTDGK KWRCAKEAMP  240
EYKYCEKHLH RGRHRSRKLV DPSSATGLPP PPPSQTKAPH FPAPERIGLS IALPSGQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144RRRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-29growth-regulating factor 2