PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0826s0001.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 494aa    MW: 53863.5 Da    PI: 8.8098
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0826s0001.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-093634001954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ ++++ LAk+ gLt +qV++WF N R +
  Kalax.0826s0001.3.p 363 FEHflHPYPKDSDKQMLAKQAGLTRSQVSNWFINARVR 400
                          564459******************************88 PP
2BELL109.91.5e-35227297171
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                          er+e+q+kk kL+ +l+eV+ rY+qy++q+q+vi+sFe++ag gsa+ Yt+lAl++iSr+FrcLkdai+ q
  Kalax.0826s0001.3.p 227 ERHEIQMKKGKLVCMLDEVEVRYRQYQQQMQIVIASFEQAAGQGSARTYTALALRTISRQFRCLKDAIVVQ 297
                          79******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-54149296IPR006563POX domain
PfamPF075264.9E-45154295IPR006563POX domain
PROSITE profilePS5007112.228341404IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-28343418IPR009057Homeodomain-like
SMARTSM003891.2E-8344408IPR001356Homeobox domain
CDDcd000865.55E-12344405No hitNo description
SuperFamilySSF466891.84E-16345411IPR009057Homeodomain-like
PfamPF059206.1E-18361400IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MAAYFNGGNS QIQAADGLQT LIFMNPSYVN NHHHQNPNNF LFANPSMSPA TDQSQQLVGV  60
PLQQNQHPEP ISALHGLVPR PHYNLWTPIV RDNPRPQKGL SLSLSNSQQQ QQVGFAGTPS  120
SAISPSSGSK DDGIGTPSPA SVISNGPASG LRSVLLCSKY LKATQQLLEE VVNVGSAMDS  180
AKKKDTATGS SCKAATEASS PEAAAAAVAV GDGENGGKKA AELSTAERHE IQMKKGKLVC  240
MLDEVEVRYR QYQQQMQIVI ASFEQAAGQG SARTYTALAL RTISRQFRCL KDAIVVQMRA  300
MSKSLGEEED MGIKEGGSRL KFVDHHLRQQ RALQQLGMIQ HNAWRPQRGL PERSVSVLRA  360
WLFEHFLHPY PKDSDKQMLA KQAGLTRSQV SNWFINARVR LWKPMVEEMY NEEVKEQENH  420
ESTDKTGISG NNNAKAYASK VPTHDNISFK NVSPEDTGAT AAAKSDSVSP GRLRNQNTGF  480
SLVGSSELEG ISEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-16350408563Homeobox protein Meis2
3k2a_B7e-16350408563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6228570.0EU622857.1 Kalanchoe x houghtonii BEL1 (Bel1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892424.11e-171BEL1-like homeodomain protein 1 isoform X1
RefseqXP_021892425.11e-172BEL1-like homeodomain protein 1 isoform X2
RefseqXP_021892426.11e-172BEL1-like homeodomain protein 1 isoform X2
RefseqXP_021892427.11e-172BEL1-like homeodomain protein 1 isoform X2
SwissprotQ9SJ561e-125BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLB2MV690.0B2MV69_9MAGN; BEL1
STRINGEOY084861e-173(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-112BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]