PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0826s0001.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 494aa MW: 53863.5 Da PI: 8.8098 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.5 | 1.3e-09 | 363 | 400 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++ LAk+ gLt +qV++WF N R + Kalax.0826s0001.3.p 363 FEHflHPYPKDSDKQMLAKQAGLTRSQVSNWFINARVR 400 564459******************************88 PP | |||||||
2 | BELL | 109.9 | 1.5e-35 | 227 | 297 | 1 | 71 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 er+e+q+kk kL+ +l+eV+ rY+qy++q+q+vi+sFe++ag gsa+ Yt+lAl++iSr+FrcLkdai+ q Kalax.0826s0001.3.p 227 ERHEIQMKKGKLVCMLDEVEVRYRQYQQQMQIVIASFEQAAGQGSARTYTALALRTISRQFRCLKDAIVVQ 297 79******************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-54 | 149 | 296 | IPR006563 | POX domain |
Pfam | PF07526 | 4.9E-45 | 154 | 295 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 341 | 404 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-28 | 343 | 418 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-8 | 344 | 408 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.55E-12 | 344 | 405 | No hit | No description |
SuperFamily | SSF46689 | 1.84E-16 | 345 | 411 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.1E-18 | 361 | 400 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 494 aa Download sequence Send to blast |
MAAYFNGGNS QIQAADGLQT LIFMNPSYVN NHHHQNPNNF LFANPSMSPA TDQSQQLVGV 60 PLQQNQHPEP ISALHGLVPR PHYNLWTPIV RDNPRPQKGL SLSLSNSQQQ QQVGFAGTPS 120 SAISPSSGSK DDGIGTPSPA SVISNGPASG LRSVLLCSKY LKATQQLLEE VVNVGSAMDS 180 AKKKDTATGS SCKAATEASS PEAAAAAVAV GDGENGGKKA AELSTAERHE IQMKKGKLVC 240 MLDEVEVRYR QYQQQMQIVI ASFEQAAGQG SARTYTALAL RTISRQFRCL KDAIVVQMRA 300 MSKSLGEEED MGIKEGGSRL KFVDHHLRQQ RALQQLGMIQ HNAWRPQRGL PERSVSVLRA 360 WLFEHFLHPY PKDSDKQMLA KQAGLTRSQV SNWFINARVR LWKPMVEEMY NEEVKEQENH 420 ESTDKTGISG NNNAKAYASK VPTHDNISFK NVSPEDTGAT AAAKSDSVSP GRLRNQNTGF 480 SLVGSSELEG ISEM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 7e-16 | 350 | 408 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 7e-16 | 350 | 408 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU622857 | 0.0 | EU622857.1 Kalanchoe x houghtonii BEL1 (Bel1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021892424.1 | 1e-171 | BEL1-like homeodomain protein 1 isoform X1 | ||||
Refseq | XP_021892425.1 | 1e-172 | BEL1-like homeodomain protein 1 isoform X2 | ||||
Refseq | XP_021892426.1 | 1e-172 | BEL1-like homeodomain protein 1 isoform X2 | ||||
Refseq | XP_021892427.1 | 1e-172 | BEL1-like homeodomain protein 1 isoform X2 | ||||
Swissprot | Q9SJ56 | 1e-125 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | B2MV69 | 0.0 | B2MV69_9MAGN; BEL1 | ||||
STRING | EOY08486 | 1e-173 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-112 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0826s0001.3.p |
Publications ? help Back to Top | |||
---|---|---|---|
|