PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0822s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 17225.2 Da PI: 10.0535 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.6e-16 | 30 | 78 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr +k +g+WvAeIr+p++ r r++lg++ ta Aa+a++ a l+g Kalax.0822s0014.1.p 30 YNGVRMRK-WGKWVAEIREPKK---RSRIWLGTYKTAVAAARAHDVALFHLRG 78 78***999.**********965...5**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.931 | 29 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 29 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-34 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 30 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.5E-9 | 30 | 41 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.60E-24 | 30 | 88 | No hit | No description |
Pfam | PF00847 | 4.8E-10 | 30 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MEEKQSDGGG GSSHSQSRAV FGSGRGGREY NGVRMRKWGK WVAEIREPKK RSRIWLGTYK 60 TAVAAARAHD VALFHLRGRS EKLNFPEDFV GRVSVEMSAE EIRRMATAVG AEVDAAELGR 120 RRRRDVNEPP RCGGAEGGDE EGGGCGGSGR PDLNRLPD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-15 | 27 | 86 | 3 | 63 | ATERF1 |
3gcc_A | 6e-15 | 27 | 86 | 3 | 63 | ATERF1 |
5wx9_A | 1e-14 | 29 | 89 | 14 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001268123.1 | 1e-39 | drought responsive element binding protein | ||||
Swissprot | Q9SNE1 | 1e-33 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | A0A438KQR4 | 3e-38 | A0A438KQR4_VITVI; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A5BZA7 | 4e-38 | A5BZA7_VITVI; Uncharacterized protein | ||||
TrEMBL | A6XA90 | 3e-38 | A6XA90_VITVI; Drought responsive element binding protein | ||||
STRING | VIT_07s0031g00190.t01 | 5e-39 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 6e-29 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0822s0014.1.p |
Publications ? help Back to Top | |||
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