PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0822s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 289aa    MW: 30898.7 Da    PI: 6.9318
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0822s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.58.6e-201358147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEdell  +v+++G ++W++I+r ++ gR++k+c++rw + 
  Kalax.0822s0004.1.p 13 KGPWSPEEDELLQSLVEKHGARNWSLISRAIP-GRSGKSCRLRWCNQ 58
                         79******************************.***********985 PP
2Myb_DNA-binding551.9e-1765109147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r ++T+eEde +++a+++ G++ W+tIar ++ gRt++ +k++w++ 
  Kalax.0822s0004.1.p  65 RRPFTAEEDEVILRAHARVGNR-WATIARLLN-GRTDNAVKNHWNST 109
                          679*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.462863IPR017930Myb domain
SuperFamilySSF466893.15E-3211106IPR009057Homeodomain-like
SMARTSM007172.2E-171261IPR001005SANT/Myb domain
PfamPF002496.2E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-271466IPR009057Homeodomain-like
CDDcd001672.13E-161557No hitNo description
SMARTSM007174.2E-1564112IPR001005SANT/Myb domain
PROSITE profilePS5129421.37265114IPR017930Myb domain
PfamPF002492.3E-1465109IPR001005SANT/Myb domain
CDDcd001671.40E-1167110No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2367114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MASGGGVLGE KIKGPWSPEE DELLQSLVEK HGARNWSLIS RAIPGRSGKS CRLRWCNQLS  60
PEVERRPFTA EEDEVILRAH ARVGNRWATI ARLLNGRTDN AVKNHWNSTL KRKCPWISPS  120
GSDASDSSVH ILSSIPAGRK TVGGLLWLGG NETASYGDDG VATELSLSLS MPGAESSQSS  180
GGQPQLIEFG KQPEPEPEPE PAVKMGDVTT ELGLAAVGSQ GSRKEKEKEE EIIGGSGSQP  240
LATEFWGTMR EMIRKEVRSY MSGGGVSGGG VCSRGDMAMT RIRIGRSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-40101141105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593613e-46KF059361.1 Salvia miltiorrhiza MYB-related transcription factor (MYB7) mRNA, complete cds.
GenBankKF0594713e-46KF059471.1 Salvia miltiorrhiza MYB-related transcription factor (MYB7) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020210181.12e-77transcription factor MYB44
TrEMBLA0A151U4244e-76A0A151U424_CAJCA; Transcription factor MYB44
STRINGVIT_07s0129g01050.t013e-75(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-63myb domain protein 70