PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0814s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YA | ||||||||
Protein Properties | Length: 321aa MW: 34869.1 Da PI: 9.7542 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 95.1 | 8.2e-30 | 155 | 211 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RR Rak+e kk +++rkpy+heSRh hA+rRpRg+gGrF Kalax.0814s0002.1.p 155 DGPIYVNAKQYHGIIRRRLYRAKAELVKKS-IRARKPYMHESRHLHAMRRPRGCGGRF 211 57************************9999.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.3E-33 | 153 | 214 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.655 | 154 | 214 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.8E-23 | 157 | 179 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.6E-26 | 157 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 159 | 179 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 8.8E-23 | 188 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MQTVYLKEYE GMSENTIGHL TSGQRMPWWA ADSHSDPTDA FRHLKALPAE HAAAGSQFTL 60 TKSDPSEVVK GAGKGGSTQF TISTGGERNQ HVRASITVQP TLPDYQSHLE SGFGQAMVYS 120 KYPYGDQSYS VMSTYGPQVA VQGRMMLPLD MTSDDGPIYV NAKQYHGIIR RRLYRAKAEL 180 VKKSIRARKP YMHESRHLHA MRRPRGCGGR FLNTKIPDAG MGGNSMKSTS NGLLTQPTGS 240 PSSGIFQSDS GTLNSPKQSN SDMSHMSGSE ATSMYTRGDL RRFTTNFLSH SLPAVMDTGH 300 GIGAPSHWVA AAQNCCNLNA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 3e-17 | 155 | 212 | 2 | 60 | HAPB protein |
4g92_A | 3e-17 | 155 | 212 | 2 | 60 | HAPB protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002263793.1 | 1e-111 | PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 | ||||
Refseq | XP_019076993.1 | 1e-111 | PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 | ||||
TrEMBL | F6I3K7 | 1e-110 | F6I3K7_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0032g01190.t01 | 1e-110 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 1e-53 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0814s0002.1.p |