PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0810s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 399aa    MW: 44588.6 Da    PI: 4.4945
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0810s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.38e-36561472102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye++ed+e++e++sws   nsf+v+d+++f++++LpkyFkh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k
  Kalax.0810s0010.1.p  56 FLTKTYEMVEDPETDEVVSWSVARNSFIVWDSNRFSTTLLPKYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQK 136
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++ikr+++
  Kalax.0810s0010.1.p 137 HLLKTIKRRRH 147
                          ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3852145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.9E-6152145IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.12E-3452145IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.2E-205679IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3156145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-2094106IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434095119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-20107119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDRAKTTVKE EEVVITSNGM TSGGGITSSA ASSTTTTTSS APRPMEGLHD TGPPPFLTKT  60
YEMVEDPETD EVVSWSVARN SFIVWDSNRF STTLLPKYFK HNNFSSFIRQ LNTYGFRKVD  120
PDRWEFANEG FLGGQKHLLK TIKRRRHVAQ NVQQHGGSSV CVEVGQYGLE GQLERLRRDR  180
SVLMTEILRL KQEQQESREY IVAMQNRLQA TERKQQQMMN FLARALNNPS FIQQFMLESA  240
ERRALEGANM KRKRRLTAST SAENLKEQID ILAVQDDSLG LGQGLQAQDD LTNMESEIET  300
LFAAGLESES SNDVRLPPRA ESMAKAGGSN LGSVNETLWD ELLSDDLVAD NEDDEQLFLG  360
DIPDIDVPVE DLGGADPSDW GEDLQDLVDQ MNFLKSKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-265414527129Heat shock factor protein 1
5d5v_B1e-265414527129Heat shock factor protein 1
5d5v_D1e-265414527129Heat shock factor protein 1
5hdg_A9e-27541458110Heat shock factor protein 1
5hdn_A9e-27541458110Heat shock factor protein 1
5hdn_B9e-27541458110Heat shock factor protein 1
5hdn_C9e-27541458110Heat shock factor protein 1
5hdn_D9e-27541458110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144LKTIKRR
2174179RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020536555.11e-167heat shock factor protein HSF30
SwissprotP411521e-131HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A067KQI11e-166A0A067KQI1_JATCU; Uncharacterized protein
STRINGEOY299281e-161(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-127heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]