PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0808s0012.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 737aa MW: 82711.6 Da PI: 6.4307

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0808s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	375.9	5.2e-115	362	733	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL+ cA+av+++d++ +lL+++++++s++gd mqR+a+yf+++L+arla+s++ y+++ ++ s +++l+a++++ +sP+ Kalax.0808s0012.1.p 362 LRTLLTLCAQAVAANDQRGSMELLKQIRQHSSETGDGMQRMAHYFANGLEARLAGSGTPFYRTMLHRNRS---AADVLKAYHMYLAISPF 448 5789********************************************************99999998...9************ PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k+s++ aN++I++ +e+++++HiiDf+i+ G+QWp+L+q L++Rp+gpp++RiTg++ p++g ++++ etg+rLa++Ae+++vpfe+ Kalax.0808s0012.1.p 449 RKMSNFFANKTIMQVAENKTKLHIIDFGIQFGFQWPCLIQRLSARPGGPPKIRITGIDFPQPGfrPADKVDETGRRLANYAESFDVPFEY 538 **********************************************************9*********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 n +ak++e++++++L+++ +E+l+Vn+ + + ++ldesv+++s+r++v+kl+++++P+++++ + +n++ F rf e++ +ys+l+ Kalax.0808s0012.1.p 539 NG-IAKEWETITTDDLKLRDDEVLVVNCLFIMRNVLDESVKVDSPRNAVMKLIRKTNPTIFIHGVVNGTYNAPFFISRFRESVFHYSSLY 627 .7************************************************************************************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d+le+++pr+ er +E+e++gre++nvvaceg+er+er et ++W+ r +aGF p+pl+e+++ ak ++ ++ + +++ e+ ++l Kalax.0808s0012.1.p 628 DMLETNIPRDIPERLLIEKEIFGRELMNVVACEGSERTERPETCKQWQVRTLRAGFIPLPLNEEIMRLAKERVKSCYHKDFMIGEDGNWL 717 *************************************************************************889****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 ++gWk+r + +S+Wr Kalax.0808s0012.1.p 718 IQGWKGRIAYGLSSWR 733 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.246	336	713	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-112	362	733	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MVMDQGVTGC FDSMKGLDMN ELIKALPDQS LLYGINSHSN AFPVAPDSRN SGSETKMGFQ 60 AGVECQEDCD FSDIVLKYIS QILMEENLEE KKYLEEQESA ALLAAEKSLY EVIGKTHPTA 120 LEHVLTQTAD TNVGESSKSN TTSGVFDYSS CSSGSPVEPL EQILNIEVAE CQHLSSTSVS 180 RSQSSFNSYS STGSVGDRLA VSPINTLVEH HMLDEQSARR FAKGLMGTNK SFPTEDHSFS 240 SCLYNESLLK SSKDVMIKDE EKNEHGYSAH GPKSRKSSHP KDDLVEEERN NKMSAAYNET 300 VLRTEMFDMV LLNSGTEAAE RESALREALL NEANKNGQQN VQAKGAKGRG KKSKSKRELV 360 DLRTLLTLCA QAVAANDQRG SMELLKQIRQ HSSETGDGMQ RMAHYFANGL EARLAGSGTP 420 FYRTMLHRNR SAADVLKAYH MYLAISPFRK MSNFFANKTI MQVAENKTKL HIIDFGIQFG 480 FQWPCLIQRL SARPGGPPKI RITGIDFPQP GFRPADKVDE TGRRLANYAE SFDVPFEYNG 540 IAKEWETITT DDLKLRDDEV LVVNCLFIMR NVLDESVKVD SPRNAVMKLI RKTNPTIFIH 600 GVVNGTYNAP FFISRFRESV FHYSSLYDML ETNIPRDIPE RLLIEKEIFG RELMNVVACE 660 GSERTERPET CKQWQVRTLR AGFIPLPLNE EIMRLAKERV KSCYHKDFMI GEDGNWLIQG 720 WKGRIAYGLS SWRPAN*

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MVMDQGVTGC FDSMKGLDMN ELIKALPDQS LLYGINSHSN AFPVAPDSRN SGSETKMGFQ  60
AGVECQEDCD FSDIVLKYIS QILMEENLEE KKYLEEQESA ALLAAEKSLY EVIGKTHPTA  120
LEHVLTQTAD TNVGESSKSN TTSGVFDYSS CSSGSPVEPL EQILNIEVAE CQHLSSTSVS  180
RSQSSFNSYS STGSVGDRLA VSPINTLVEH HMLDEQSARR FAKGLMGTNK SFPTEDHSFS  240
SCLYNESLLK SSKDVMIKDE EKNEHGYSAH GPKSRKSSHP KDDLVEEERN NKMSAAYNET  300
VLRTEMFDMV LLNSGTEAAE RESALREALL NEANKNGQQN VQAKGAKGRG KKSKSKRELV  360
DLRTLLTLCA QAVAANDQRG SMELLKQIRQ HSSETGDGMQ RMAHYFANGL EARLAGSGTP  420
FYRTMLHRNR SAADVLKAYH MYLAISPFRK MSNFFANKTI MQVAENKTKL HIIDFGIQFG  480
FQWPCLIQRL SARPGGPPKI RITGIDFPQP GFRPADKVDE TGRRLANYAE SFDVPFEYNG  540
IAKEWETITT DDLKLRDDEV LVVNCLFIMR NVLDESVKVD SPRNAVMKLI RKTNPTIFIH  600
GVVNGTYNAP FFISRFRESV FHYSSLYDML ETNIPRDIPE RLLIEKEIFG RELMNVVACE  660
GSERTERPET CKQWQVRTLR AGFIPLPLNE EIMRLAKERV KSCYHKDFMI GEDGNWLIQG  720
WKGRIAYGLS SWRPAN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-48	362	733	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017223003.1	0.0	PREDICTED: scarecrow-like protein 9
TrEMBL	A0A067G0Q2	0.0	A0A067G0Q2_CITSI; Uncharacterized protein
TrEMBL	A0A2N9ESZ9	0.0	A0A2N9ESZ9_FAGSY; Uncharacterized protein
STRING	XP_006486464.1	0.0	(Citrus sinensis)
STRING	XP_006435553.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-175	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Kalax.0808s0012.1.p