PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0807s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 319aa    MW: 36076.5 Da    PI: 8.7666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0807s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-125198148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W+++Ed +l d++      +W++I+++ g+ R +k+c++rw +yl
  Kalax.0807s0003.1.p 51 RGLWSPDEDRKLRDYIINNDRASWSSIPAKAGLQRNGKSCRLRWINYL 98
                         788*****************99************************97 PP
2Myb_DNA-binding482.9e-15104148147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +T eE e  + ++++lG++ W+ I+++++ gRt++++k++w++ 
  Kalax.0807s0003.1.p 104 RGTFTLEERETVLTLHRMLGNK-WAEISKHLP-GRTDNEIKNYWHSN 148
                          899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3474698IPR017930Myb domain
SuperFamilySSF466895.62E-2549145IPR009057Homeodomain-like
SMARTSM007176.8E-850100IPR001005SANT/Myb domain
PfamPF002492.1E-105198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-1952105IPR009057Homeodomain-like
CDDcd001676.95E-75498No hitNo description
PROSITE profilePS5129422.55599153IPR017930Myb domain
SMARTSM007179.8E-15103151IPR001005SANT/Myb domain
PfamPF002495.2E-14104148IPR001005SANT/Myb domain
CDDcd001671.25E-10106149No hitNo description
Gene3DG3DSA:1.10.10.601.1E-22106151IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVDPTGQTRR LIRGKNHPPR IITVWNFENG CSLRLSSMGH KPNTLKVKHR RGLWSPDEDR  60
KLRDYIINND RASWSSIPAK AGLQRNGKSC RLRWINYLRP GLKRGTFTLE ERETVLTLHR  120
MLGNKWAEIS KHLPGRTDNE IKNYWHSNLK SRNSVKNEVS QSPSAARQIS SSMSSICLQS  180
LKTANNGSSL MGTSSVGTTA CQPDTPATKF ASETLTPKLL FAEWFSPDRR QQEFPDFLGG  240
YGEHPNDCLN PITSFPDYLL EELSFEEGSF CSNFNAPDGL NFPSPYELQG LISGEEEFGT  300
GNEMYNLDGR FYSENRLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-22511527107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A445F5U09e-61A0A445F5U0_GLYSO; Transcription factor LAF1 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-50myb domain protein 18