PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0803s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 401aa MW: 44367 Da PI: 7.4392 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl Kalax.0803s0002.1.p 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.5 | 1.8e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++d+++ lG++ W+ Ia+ ++ gRt++++k+ w++ Kalax.0803s0002.1.p 67 RGAFSPQEETLIIDLHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.006 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.28E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.94E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.862 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.0E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-8 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SPQEETLIID LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG 120 IDPDTHKPLS SDPVKASLDT HPTGKQQQSS LFDAENKQQS NTREFFLDRF VVSANTETAS 180 STVTVAAAAA GCKPAADVLG YFSFQQLSNN HSYHGSSAEH DSSNTLCFNP NDHQFSSNPV 240 PSMFSSISSS FLTAPAATVA LPSSNSNNSS SIGSYSMNHN ASVQNWDSHS FSWGPSDCGK 300 SNKDDQQQQL DGGENEDSKW SEYLQTTAPF LLAGTSYPNL HAMCHSTDII KPETHCHETN 360 NSSTASPASL LWHHQQQQSL SDAYSKQDFH RLAVAFEPSF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKKLRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002276091.1 | 1e-120 | PREDICTED: transcription factor MYB86 | ||||
TrEMBL | A0A438GYK1 | 1e-118 | A0A438GYK1_VITVI; Transcription factor MYB61 | ||||
TrEMBL | A5C8P8 | 1e-118 | A5C8P8_VITVI; Uncharacterized protein | ||||
TrEMBL | F6I4I7 | 1e-118 | F6I4I7_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0060g00240.t01 | 1e-119 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 6e-89 | myb domain protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0803s0002.1.p |