PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0799s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 503aa    MW: 55443.7 Da    PI: 4.3635
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0799s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.4e-36381302103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y++++d++++ ++sws+ +nsfvv+++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk
  Kalax.0799s0010.1.p  38 FLCKTYDMVDDPSTDAVVSWSSGNNSFVVWNPPEFGRDLLPKYFKHNNFSSFVRQLNTYGFRKVHPDR---------WEFANEGFLRGKK 118
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++ikr+k +
  Kalax.0799s0010.1.p 119 HLLNTIKRRKAS 130
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-3533127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-6234127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3834127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.9E-3238127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSNGADGGIS GTCRAESTQS VPAPVPVPMP NPNAPPPFLC KTYDMVDDPS TDAVVSWSSG  60
NNSFVVWNPP EFGRDLLPKY FKHNNFSSFV RQLNTYGFRK VHPDRWEFAN EGFLRGKKHL  120
LNTIKRRKAS QAPTQSQLEQ SQVQSPAATA CVEVGKFGLE EEVEILKRDK NVLMQELVKL  180
RQQQQTTDKQ LQVTMDRLQG MEERQQQLMS FLAKAVQSPG FFSQFVLQQA QNNRLISEAN  240
KKRRLKQDDV TMDYPSSNPG SQIVKYQPFL NEVSTAFLQQ MMEVDNSSQL EFRNNDPDNL  300
FLDDASSSSN GGSSMDGVSK PPIPEVPASS AQFRSPPPSM IPPCGSAGDL VDVQHSSLGA  360
SSEVGRIIHH PPVSSDKQDS SPPSDLQSGP ALPMFTDMVP ESVAENLNDD SIQFDATTFG  420
LDTDLPFGIE SISPGHVPND MSAYEDVWKM LSEEIDSAQL DHLANESEML LVEDELDSSQ  480
NIDHLTDQME LLSSGAEKND LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-272913011123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239246NKKRRLKQ
2240245KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236740.21e-157heat stress transcription factor 33
RefseqXP_028208075.11e-157heat shock factor protein HSF8-like
SwissprotP411531e-125HSF8_SOLPE; Heat shock factor protein HSF8
TrEMBLQ564C81e-156Q564C8_SOYBN; Heat shock factor protein hsf8-related
STRINGGLYMA16G13400.11e-156(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-105heat shock transcription factor A1D
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]