PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0798s0015.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 261aa MW: 29117.8 Da PI: 6.5098 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.8 | 2.1e-55 | 79 | 181 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 l++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+t+tdi Kalax.0798s0015.5.p 79 LQNFWANQyqeIEQTTDFKNHNLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITSTDI 168 89*****9999******************************************************************************* PP NF-YC 89 fdflvdivprdel 101 fdflvdivpr++l Kalax.0798s0015.5.p 169 FDFLVDIVPREDL 181 **********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.69E-33 | 66 | 172 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.3E-37 | 92 | 164 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-21 | 100 | 163 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEQQGHTQAP ATGVGGGSAQ MPYGVASYQP NQIMGSTPQG SARSPTQPGM PGSSAQVAQH 60 QLAYQHIHHQ QQQQLQQHLQ NFWANQYQEI EQTTDFKNHN LPLARIKKIM KADEDVRMIS 120 AEAPVIFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAITSTDIFD FLVDIVPRED 180 LKDEVFANMP RGGAIPATGI PDALPYYYMA PQHAPPVGAP GMIMGRPVMD QPIYGQQPRP 240 YMGQQMWPHN QPQQRPPEDS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-61 | 86 | 178 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 156 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121247.1 | 1e-127 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_027121248.1 | 1e-127 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Swissprot | Q8L4B2 | 6e-83 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | U5G109 | 1e-126 | U5G109_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s03730.1 | 1e-126 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 1e-81 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0798s0015.5.p |