PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0797s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 451aa MW: 49100.3 Da PI: 9.368

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0797s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.4	1.9e-09	337	385	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g W+ I r+ +R+ ++k++w+++l Kalax.0797s0008.1.p 337 AWTLSEVMKLVEGVSRYGAGKWSEIKRYSFtsyPHRSSVDLKDKWRNLL 385 7*************************999999***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.443	330	389	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-13	332	391	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-9	334	387	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.24E-16	336	393	IPR009057	Homeodomain-like
CDD	cd11660	6.24E-20	336	386	No hit	No description
Pfam	PF00249	9.6E-7	337	385	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MLESSSIDDG ADPRTEPAPV EPFLQTAGST SSLKTIGSLP AAADTSNFPD DVSAHPDFSI 60 LDGHLCLDTL SVRELHQAFR ATFGRQTASK DKLWLKRRIA MALSNSCHIP TMNFLIKDHK 120 VTLITGLGAH AGVDEVPGGL INDASSDKHQ HQIPQVPEAN VSTTEPAANP SLDQSLSGDG 180 LQSDHKAAKR VRKPTKRYIE ELSEIESNHV GRRPSPSVKM PGQGQTLHTS HQTSITNVYP 240 HAKVAVTRLD SIGGSGVQVP FVSRIRRCRP RENIASLLPK CPQENRESPV ADMSRLNQKH 300 GQEMESKSTE GASGTFDGVP VAVPHLTGEM SRKHHRAWTL SEVMKLVEGV SRYGAGKWSE 360 IKRYSFTSYP HRSSVDLKDK WRNLLRASLA ESSHENRGAC SRKQTQAPLP APILSKVREL 420 AERQAQTPPP INNPTKMMGN CEKGPGSGYL *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MLESSSIDDG ADPRTEPAPV EPFLQTAGST SSLKTIGSLP AAADTSNFPD DVSAHPDFSI  60
LDGHLCLDTL SVRELHQAFR ATFGRQTASK DKLWLKRRIA MALSNSCHIP TMNFLIKDHK  120
VTLITGLGAH AGVDEVPGGL INDASSDKHQ HQIPQVPEAN VSTTEPAANP SLDQSLSGDG  180
LQSDHKAAKR VRKPTKRYIE ELSEIESNHV GRRPSPSVKM PGQGQTLHTS HQTSITNVYP  240
HAKVAVTRLD SIGGSGVQVP FVSRIRRCRP RENIASLLPK CPQENRESPV ADMSRLNQKH  300
GQEMESKSTE GASGTFDGVP VAVPHLTGEM SRKHHRAWTL SEVMKLVEGV SRYGAGKWSE  360
IKRYSFTSYP HRSSVDLKDK WRNLLRASLA ESSHENRGAC SRKQTQAPLP APILSKVREL  420
AERQAQTPPP INNPTKMMGN CEKGPGSGYL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	4e-86	TRF-like 6

Link Out ? help Back to Top
Phytozome	Kalax.0797s0008.1.p