PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0796s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 337aa    MW: 36693.1 Da    PI: 10.3866
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0796s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.8e-1674119147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+ +G+++W++Ia++++ gR++k+c++rw++ 
  Kalax.0796s0011.1.p  74 RGHWRPAEDAKLKHLVAHFGPHNWNLIAHKLQ-GRSGKSCRLRWFNQ 119
                          899*****************************.***********996 PP
2Myb_DNA-binding491.4e-15127169246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +++ eE+ +l+ a++ lG++ W++Ia+ ++ gRt++ +k++w+ 
  Kalax.0796s0011.1.p 127 RAFSDEEEGRLLAAHATLGNK-WALIAKLFP-GRTDNAVKNHWHV 169
                          689******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.00469120IPR017930Myb domain
SMARTSM007171.7E-1373122IPR001005SANT/Myb domain
PfamPF002491.4E-1574119IPR001005SANT/Myb domain
SuperFamilySSF466892.66E-2774170IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-2575127IPR009057Homeodomain-like
CDDcd001674.95E-1377118No hitNo description
PROSITE profilePS5129423.965121175IPR017930Myb domain
SMARTSM007172.6E-12125173IPR001005SANT/Myb domain
PfamPF002492.8E-13127168IPR001005SANT/Myb domain
CDDcd001679.42E-10128168No hitNo description
Gene3DG3DSA:1.10.10.601.3E-19128173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MMSRLLPPPP VSYTCYDPPR QNPSQTRRFH SLLLPPTATD AQVDAKKTSI VQGGRPILET  60
DSSDGGAVVK VCSRGHWRPA EDAKLKHLVA HFGPHNWNLI AHKLQGRSGK SCRLRWFNQL  120
DPKINKRAFS DEEEGRLLAA HATLGNKWAL IAKLFPGRTD NAVKNHWHVI VARRQREQSR  180
HFYKQQQQQQ SLSLGTNTHQ LERSINLASS SGLAYSDDVS RSTIVDEYNP SATATATASV  240
DLSLSPTSVA ASFGKFHQHH YFLERGSGQS VGAAGSSKHT ADTASAAASR NVRGCRVVVC  300
GGNGKESAQN ENNNGVSKSK SKSVHYFDFL GLGPAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31741747107B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254925.12e-72PREDICTED: myb-related protein 330
TrEMBLA0A161ZXU15e-71A0A161ZXU1_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.15e-65myb domain protein 56