PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0787s0017.5.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 276aa    MW: 31426.8 Da    PI: 8.646
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0787s0017.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05224323
                         ET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                         Cp   C+ s++rk++L+rH+r H
  Kalax.0787s0017.5.p  2 CPvdGCHSSYRRKDHLTRHLRQH 24
                         9999*****************98 PP
2zf-C2H217.21.4e-056690123
                         EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                         ++C+   Cgk F+  s L++H  +H
  Kalax.0787s0017.5.p 66 HVCQedGCGKAFRFASKLQKHELSH 90
                         789999***************9998 PP
3zf-C2H215.54.8e-05157181223
                          EET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                          kC+   C  +Fs++snL++H +  H
  Kalax.0787s0017.5.p 157 KCNfeGCLHTFSNRSNLQQHVKAvH 181
                          699999**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.369129IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-7126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.4124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-51058No hitNo description
PROSITE profilePS501579.5562957IPR007087Zinc finger, C2H2
SMARTSM00355432952IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.65E-56492No hitNo description
Gene3DG3DSA:3.30.160.601.0E-76490IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.456695IPR007087Zinc finger, C2H2
SMARTSM003550.0236690IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806890IPR007087Zinc finger, C2H2
SMARTSM003556.698123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100123IPR007087Zinc finger, C2H2
SMARTSM0035511126147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-8137178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.7E-8137191No hitNo description
PROSITE profilePS5015710.159156186IPR007087Zinc finger, C2H2
SMARTSM003550.0024156181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158181IPR007087Zinc finger, C2H2
SMARTSM003555187212IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189213IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MCPVDGCHSS YRRKDHLTRH LRQHEGNVFK CSNEKCARQF VSQANLTRHK CHEPETPFSG  60
CALKQHVCQE DGCGKAFRFA SKLQKHELSH VKLETTEAIC LETDCLKYFS NEECLKAHMD  120
ACHQHINCEV CGSKQLKKNL KRHLRTHEPG HANEPVKCNF EGCLHTFSNR SNLQQHVKAV  180
HLNIKRFACG YADCGMKFAY KHVRDNHEKT SHHVYTQGDF LESREQCRVT PCGGRKRKCP  240
SIASVLVKRI TPLPKDSDST ASSMYSAWMT VTNSE*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278827.11e-114PREDICTED: transcription factor IIIA
SwissprotQ84MZ43e-73TF3A_ARATH; Transcription factor IIIA
TrEMBLD7TQ661e-112D7TQ66_VITVI; Uncharacterized protein
STRINGVIT_08s0040g00240.t011e-113(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-76transcription factor IIIA