PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0786s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 241aa    MW: 26355.6 Da    PI: 4.973
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0786s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-1861111155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g
  Kalax.0786s0012.1.p  61 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAAMSIKG 111
                          68*****998.**********843...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-1361111IPR001471AP2/ERF domain
PROSITE profilePS5103223.31462119IPR001471AP2/ERF domain
SMARTSM003806.0E-3562125IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2262120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-3262120IPR001471AP2/ERF domain
PRINTSPR003672.4E-106374IPR001471AP2/ERF domain
CDDcd000189.91E-3363121No hitNo description
PRINTSPR003672.4E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVQQPSFSSD TTESSSNSLE STQSMVNNQT ATEPGKSSKA KETMTTGKKR ARDKKCESKH  60
PVYRGVRMRN WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDVAAMSIK GANAILNFPD  120
LASSLPRPAS CSPRDIQAAA AKAAAMEQFN LSPSSSVSSL VTDTDQDNAA EEEQELGEIV  180
QLPRLDDGGR CEFVLMDYSG GWVYPPSLLL MDDQIPMMNS FSLSSCNAFD DALLWPPDNI  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18581191072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220077.12e-64PREDICTED: dehydration-responsive element-binding protein 3
RefseqXP_020417828.12e-64dehydration-responsive element-binding protein 3
RefseqXP_024165955.12e-64dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD34e-57DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A251RCT85e-63A0A251RCT8_PRUPE; Uncharacterized protein
TrEMBLA0A2P6Q0164e-63A0A2P6Q016_ROSCH; Putative transcription factor AP2-EREBP family
TrEMBLA0A3S5HSP93e-63A0A3S5HSP9_ROSHC; Transcription factor tiny
TrEMBLM5XYQ15e-63M5XYQ1_PRUPE; Uncharacterized protein
STRINGXP_008220077.17e-64(Prunus mume)
STRINGEMJ269738e-64(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]