PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0781s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 957aa    MW: 106383 Da    PI: 4.9802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0781s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-183278148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Kalax.0781s0020.1.p 32 KGQWTAEEDEILSKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 78
                         799****************************9.************986 PP
2Myb_DNA-binding63.63.9e-2084130148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W++eEde +v++v q+G + W+tIa++++ gR +kqc++rw+++l
  Kalax.0781s0020.1.p  84 KGPWSKEEDEVIVQLVSQYGAKKWSTIAQHLP-GRIGKQCRERWHNHL 130
                          79******************************.*************97 PP
3Myb_DNA-binding49.21.2e-15136178145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r++WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  Kalax.0781s0020.1.p 136 RDAWTQEEELALIQAHQVYGNK-WAELTKFLP-GRTDNAIKNHWN 178
                          789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1752778IPR017930Myb domain
SuperFamilySSF466893.23E-183092IPR009057Homeodomain-like
SMARTSM007176.4E-153180IPR001005SANT/Myb domain
PfamPF002491.7E-153278IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-243495IPR009057Homeodomain-like
CDDcd001671.29E-133578No hitNo description
PROSITE profilePS5129432.34679134IPR017930Myb domain
SuperFamilySSF466891.12E-3181177IPR009057Homeodomain-like
SMARTSM007172.8E-1883132IPR001005SANT/Myb domain
CDDcd001675.48E-1686130No hitNo description
PfamPF139219.1E-1887144No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2796138IPR009057Homeodomain-like
SMARTSM007171.1E-14135183IPR001005SANT/Myb domain
PROSITE profilePS5129419.253135185IPR017930Myb domain
CDDcd001672.19E-11138178No hitNo description
Gene3DG3DSA:1.10.10.604.3E-21139185IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MNHASQDGAG DRRPKMRPPH GRTSGPTRRS TKGQWTAEED EILSKAVQRF KGKNWKKIAE  60
CFKDRTDVQC LHRWQKVLNP ELIKGPWSKE EDEVIVQLVS QYGAKKWSTI AQHLPGRIGK  120
QCRERWHNHL NPAINRDAWT QEEELALIQA HQVYGNKWAE LTKFLPGRTD NAIKNHWNSS  180
VKKKMETYIA SGLLSKFQGL PHVGGRNQSM SSPASRTQQS SGDESNHKGN DIEDISECSQ  240
GSTAPGCSQN ASDMTNKIFH ARSGFNHTNC SDQMKRERRE ESSEEYFASI EEVNMSIPKI  300
EVNCSVLDQN LSHTSGGLAS DDQFNLQEFP GMSLLELGQD QRYGSAANDS NEMLYMPYHN  360
SSLMTAEMSG CEDASILHAS NIQIHDSKGT SASQTTYMRS EAVENSRFQA PSCDSSHLHF  420
HENQLQYGCG LSQVDNFTSG TEGQDLVGSP CSEFMLTENF TEPLCNDGTE YTDLCGHVDN  480
IQFAHDIPDE AAKLAECSQS APPTDELPAA KVEEREQKGG SLFYEPPRFP SLDVPFFSCD  540
LVSSNDLQQE YSPLGIRQLM MSSMNCLTPF RLWDSPAREN SPDVLLKSAA KTFNGTPSIL  600
KKRHRDLLSP LSDRRKDKRL DSDSKQNSFS SLARDFSNLD VMFEETATCS TTNQKRDSVS  660
FGDDKENVDP ALMRQKEVER GSSEKDNILC CNEEEKSSND DADQKMQHDA DADAQIVQKS  720
SENLSDNDLE NILIFSPDQV GLEADRVFIP NAWANPPSSA TQHASSINSP SVSRRSLATG  780
SSSKCMPPSY LEIEVSKAGQ ETGTENNCSM FGSTPFKRSF ESPSAWKSPW FINSFLPGPR  840
VDTDISIEDI GYFLSPGERS YDALGLMEQL SERSAAAIAE AHGILGIETP KTTLREGHPD  900
TYDNQPGSHF AQDALPERRV LDFSECETPG KESEVRMASP SVKLFSPSSY LIKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-67321856159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-67321856159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1612619DRRKDKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618556.10.0transcription factor MYB3R-1
SwissprotQ9S7G71e-178MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A2C9VK700.0A0A2C9VK70_MANES; Uncharacterized protein
STRINGXP_006476090.10.0(Citrus sinensis)
STRINGXP_006450634.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]