PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0778s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 347aa    MW: 37444.5 Da    PI: 8.902
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0778s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.1e-3861118461
               zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          + lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rk k++
  Kalax.0778s0017.1.p  61 APLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKTKQR 118
                          5789***************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.9E-3362117IPR003851Zinc finger, Dof-type
ProDomPD0074786.0E-2663117IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.22763117IPR003851Zinc finger, Dof-type
PROSITE patternPS01361065101IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MLSSTTSFDW SQPQMNETTN NSTRPPPPPM SSFQIKTLTA TDGRKLGAAT AADQQAAAAA  60
APLKCPRCDS SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKTKQRVR  120
QPSNKLPHRS GNSHDNGSDQ TTRSHGQMEE PNLGLNGLLY GKNGTNMEIF NGFGASRVTE  180
LDLCNRNSNS SSGYNQIYNL GLGFSTGDYM RNQSNNPTYL SSYSTLFGSN FSSPSCISSA  240
SPLTQSVLGS GFEYEKFVNE PPSSLNKGNM GNFMSVLPLE DMHIGGFGSG MKAEELGKQM  300
KLSQMGSVSS PSMDPSCYNW NNNGAASNVN SWPDAPSFGS SVMSLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.13e-33Dof family protein