PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0773s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRF | ||||||||
Protein Properties | Length: 230aa MW: 26252.6 Da PI: 9.3541 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.7 | 9.9e-24 | 69 | 111 | 1 | 43 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 d+ep rCrRtDGKkWRCsr++ +++k+CErH+hrg+srs++ k Kalax.0773s0002.1.p 69 DPEPSRCRRTDGKKWRCSRQAFGDSKYCERHMHRGKSRSTRNK 111 79*************************************9987 PP | |||||||
2 | QLQ | 49.8 | 1e-17 | 10 | 43 | 2 | 35 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FTaaQ+q+L++Q+l +K ++++ P+Pp+L++ i Kalax.0773s0002.1.p 10 PFTAAQWQELEHQALFFKFMVSGIPIPPDLIFSI 43 9*****************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.8E-9 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.901 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.2E-13 | 10 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.32 | 69 | 115 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.8E-19 | 70 | 111 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MLGGGSSRYP FTAAQWQELE HQALFFKFMV SGIPIPPDLI FSINGKRSQQ PQHIGWTCFQ 60 MGLSNHKIDP EPSRCRRTDG KKWRCSRQAF GDSKYCERHM HRGKSRSTRN KPLESNNTND 120 NKPPPPLLHL QTFPSKSALE SAGTQSNLSS SLTTCDMTHK PVKDSNFLTF LGIDSGWNQH 180 KKVACDLSRD DESCVVERTE KRQRRTMYHQ FIEESPPQEK TDSWLNLVI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047491.1 | 2e-52 | PREDICTED: growth-regulating factor 1 isoform X1 | ||||
Refseq | XP_010047492.1 | 2e-52 | PREDICTED: growth-regulating factor 1 isoform X2 | ||||
TrEMBL | A0A059CNF0 | 5e-51 | A0A059CNF0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047491.1 | 8e-52 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-42 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0773s0002.1.p |